Skip to content

Issues: statgen/bamUtil

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

33 Open 21 Closed
33 Open 21 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

cloneLib failure not in official release FYI
#74 opened Dec 13, 2024 by WorksAtAUni
Do not use makefiles from libStatGen
#73 opened Sep 2, 2024 by alexreg
Erroneous CIGAR string after clipOverlap
#72 opened May 27, 2024 by MboiTui
2
splitChromosome without header?
#71 opened Apr 8, 2024 by jtmorgan0
License?
#70 opened Feb 16, 2024 by jjv5
1
Odd stats reported for clipOverlap
#69 opened Oct 23, 2022 by joegeorgeson
bamutil diff - Get record for every read being compared
#66 opened Oct 6, 2021 by DavidStreid
2
can not install with conda
#65 opened Sep 30, 2021 by Frank1219
2
bash -x testBam2FastQ.sh and bash -x testMergeBam.sh failed on centos8_aarch64
#64 opened Sep 14, 2021 by Tom-python0121
bam2FastQ generates empty fastq files
#63 opened Aug 9, 2021 by LanyingMa
Error building from source: libStatGen
#61 opened Jan 15, 2021 by moldach
3
bam diff seems to return the reads that look identical between A and B
#59 opened Jun 13, 2020 by hisplan
1
Makefile should not ignore system LDFLAGS
#58 opened Jun 9, 2020 by bichkd
cannot consume -.ubam on a pipe
#57 opened May 29, 2020 by bwlang
2
Cannot Compile NonPrimaryDedup Branch
#56 opened Oct 16, 2019 by BrenKenna
5
Dedup does not work from std/in
#55 opened Apr 4, 2019 by slazicoicr
2
bam diff should exit with a return code
#54 opened Feb 28, 2019 by hisplan
Cut middle of reads
#53 opened Jan 15, 2019 by shimbalama
2
Building bamUtil returns error: undefined reference
#52 opened Dec 5, 2018 by Dlfn
4
clipOverlap in outward facing pairs
#48 opened Jan 18, 2018 by dariober
1
bam diff when 2 reads have indentical names AND start positions?
#47 opened Jan 3, 2018 by anderspitman
1
Compilation doesn't work (warnings=errors)
#45 opened Oct 20, 2017 by Tsallagov
5
Assumption made in code masked by earlier check.
#42 opened May 13, 2017 by innovate-invent
6
Update wiki build insturctions
#23 opened Mar 16, 2016 by andrewrech
1
bam recab: parallel processing
#21 opened Jan 29, 2016 by andreas-wilm
4
ProTip! Type g i on any issue or pull request to go back to the issue listing page.