RotaABM

WARNING: This repository is currently under development and is NOT ready for use!

This repository contains code for the rotavirus genetic diversity project.

Installation

pip install -e .

This installs Rotasim as an importable module.

Running the code

To run the code, import the module and call the run function. For example:

import rotasim

sim = rotasim.Sim()
sim.run()

Alternatively, run the simple.py script in the tests directory which writes results to the results folder. File names are set based on parameter values. Run plot_results.py to plot key results.