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feature/car#322

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imadmali wants to merge 69 commits intomasterstan-dev/rstanarm:masterfrom feature/carstan-dev/rstanarm:feature/carCopy head branch name to clipboard

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Commits on Jul 10, 2017

• adding stan_CARbym; print/summary methods work

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Commits on Jul 11, 2017

• get important post-estimation methods/functions working

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Commits on Jul 13, 2017

• adding stan_bym (inla version)

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• adding stan_besag (icar)

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• fixing conditional in stanreg for car models

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Commits on Jul 21, 2017

• expanding prior options for CAR models

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Commits on Jul 25, 2017

• changes to spatial.fit file

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Commits on Aug 4, 2017

• Merge branch 'master' into feature/car

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• adding linkinv chunks to spatial.stan

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• using chunk functions for meanPPD

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Commits on Aug 6, 2017

• demeaning, QR decom, and posterior methods work

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Commits on Aug 7, 2017

• get prior summary working for CAR models

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• adding documentation for CAR models

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• adding stan_besag tests; CAR models return 'terms'

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Commits on Aug 8, 2017

• adding vb methods for CAR models; optimizing currently fails

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• adding tests for stan_bym

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• use sparse matrix ops for 'scaling_factor'

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• adding light documentation for stan_spatial.fit

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• omit optimizing from supported algorithms in CAR models

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Commits on Aug 9, 2017

• use chunks stan code; use prior_aux

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• adding more likelihoods to CAR models

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Commits on Aug 10, 2017

• refactor stan chunks for spatial.stan

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Commits on Aug 11, 2017

• draft of CAR vignette; fixing binomial lpmf bug in spatial.stan

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Commits on Aug 13, 2017

• updating documentation/vignette for CAR models

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• adding 2nd order spatial random walks

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• Q should be squared if 'order == 2'

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• update stan_besag tests with inla comparisons

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• changing stan_bym to stan_bym2 (INLA convention)

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Commits on Aug 14, 2017

• adding BYM model; changing spatial parameter names

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• change parameterization in spatial.stan from prec to sd

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• convert spatial weight matrix to sparse if necessary

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Commits on Aug 15, 2017

• prior must be on theta_raw when model_type = 2

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Commits on Aug 30, 2017

• remove INLA dependency for bym2 model

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• updating CAR spatial tests

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• update CAR vignette

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Commits on Aug 31, 2017

• changing names for spatial priors

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Commits on Jan 12, 2018

• updates to besag unit tests

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• fixing conflicts in feature/car

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Commits on Jan 21, 2018

• getting spatial models to compile

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Commits on Jan 22, 2018

• get posterior predict to work with CAR models (hacky)

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Commits on Jan 30, 2018

• updating spatial docs

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Commits on Sep 5, 2018

• return error when using loo on CAR models (tentative)

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• drop loo tests

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Commits on Sep 6, 2018

• resolving merge conflicts in feature/car

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Commits on Sep 7, 2018

• modified namespace

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• Merge branch 'master' into feature/car

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• spatial.Rmd: fix encoding

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• update from master

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• Merge branch 'master' into feature/car

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Commits on Sep 9, 2018

• making CAR family func consistent with other stan models

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Commits on Sep 10, 2018

• fixing awkward family/link pairs; neg_bin(link=identity) still broken

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Commits on Sep 12, 2018

• fix count family/link issues in spatial.stan

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Commits on Oct 21, 2018

• cleanup loo

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Commits on Oct 22, 2018

• revise CAR tests

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• use sparseMatrix when dealing with CAR adjacency matrix

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• simplify spatial tests

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Commits on Oct 23, 2018

• fixing unit tests

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• Merge branch 'master' into feature/car

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• adding is_car instead of is(object, 'car')

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Commits on Oct 28, 2018

• revising spatial model vignette

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• delete src/include

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• rm src/Modules*

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• dropping INLA requirement

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• fix family/link bounds in spatial.stan

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• Merge branch 'feature/car' of https://github.com/stan-dev/rstanarm into feature/car

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• refactoring in-line declarations and likelihood contributions

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• NAMESPACE: update

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• Merge branch 'feature/car' of https://github.com/stan-dev/rstanarm into feature/car

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Commits on Jul 31, 2020

• Merge branch 'master' into feature/car

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