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MPI warmup auto metric#821

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bbbales2 wants to merge 68 commits intompi_warmup_v2stan-dev/cmdstan:mpi_warmup_v2from mpi_warmup_autostan-dev/cmdstan:mpi_warmup_autoCopy head branch name to clipboard

+16,904-12

Commits

Commits on Apr 18, 2019

• Added in switching adaptation

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  aef5072

Commits on Apr 20, 2019

• Changed 'Switching' to 'Auto'. Pointed stan submodule at modified version of Stan in personal fork that has the new adaptation stuff

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  0b652a0

Commits on Sep 4, 2019

• Merge branch 'develop' of https://github.com/stan-dev/cmdstan into experimental/warmup-auto

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  58e5527

Commits on Sep 11, 2019

• Updated submodule

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  f1fc292

Commits on Jan 8, 2020

• update submodule

  

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Commits on Jan 15, 2020

• update submodule that works with radon model

  

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• stdout with 5-core run

  

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• update submodule

  

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• fix gitmodules

  

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• update submodule

  

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• update submodule

  

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• add radon example readme

  

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  c8f7291

Commits on Jan 22, 2020

• update submodule

  

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• update submodule

  

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• update submodule

  

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• update submodule

  

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Commits on Jan 23, 2020

• each chain has its own output file when using cross-chain warmup

  

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• update submodule

  

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• random seed syncronization & cross-chain jitter

  

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Commits on Jan 24, 2020

• support user input of num_cross_chains in cmdstan

  

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  845dfa6

• fix sequential run when no MPI flags are issued

  

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  895d9ff

Commits on Jan 26, 2020

• update submodules

  

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Commits on Jan 28, 2020

• update submodule

  

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Commits on Jan 29, 2020

• update submodule

  

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  189fc17

• mpi_warmup.mk in makefile. use MPI_ADAPTED_WARMUP = 1 in make/local

  

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• update submodule

  

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• update randon model readme

  

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Commits on Jan 30, 2020

• cross_chain_window as adapt argument

  

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  14a7522

• update doc

  

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• typo

  

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  3c26404

• adapt cross_chain_ess argument

  

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• sblrc-blr model example

  

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  5e98460

• fix MPI output file name

  

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  ded8405

• cross_chain_rhat argument

  

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  53ba788

Commits on Jan 31, 2020

• default num_cross_chains to nb. of procs, err out when less

  

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  2d22968

Commits on Feb 4, 2020

• awk to replace num_warmup in output csv with actual one

  

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  b64304c

• Revert "awk to replace num_warmup in output csv with actual one"

  Show description for fe53576
  

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  fe53576

• add max_num_warmup for MPI warmup metadata

  

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  b16d18d

Commits on Feb 5, 2020

• update submodule

  

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Commits on Feb 6, 2020

• update submodule

  

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Commits on Feb 7, 2020

• init commit mpi_warmup_v2

  

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• point submodule to stan mpi_warmup_v2

  

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• update submodule

  

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Commits on Feb 10, 2020

• mpi warmup for dense_e nuts

  

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• update submodule

  

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Commits on Feb 11, 2020

• cross-chain modify chain id instead of chain seed

  

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  6aff628

• default cross_chain_ess to 200

  

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• update submodule

  

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• update submodule

  

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Commits on Feb 12, 2020

• update submodule

  

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Commits on Feb 13, 2020

• update submodule

  

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Commits on Feb 15, 2020

• Updated filename formatting to work with cmdstanr branch

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• Merge branch 'feature/issue-2814-warmup-auto' into mpi_warmup_auto

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  3b34537

Commits on Feb 17, 2020

• auto metric might be working

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  cb1c199

Commits on Feb 18, 2020

• Updated Stan module

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  a4bcdfd

• Updated Stan submodule

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  f88ee55

• Update Stan submodule

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  031c525

Commits on Feb 24, 2020

• croos-chain warmup

  

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• cross-chain warmup

  

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• Merge branch 'mpi_warmup_v2' into mpi_warmup_framework

  

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  29577f5

• cleanup model examples results

  

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  fcb6c59

Commits on Feb 25, 2020

• update submodule

  

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• update submodule

  

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• update submodule

  

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Commits on Feb 26, 2020

• update submodule

  

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• Merge remote-tracking branch 'origin/mpi_warmup_v2' into mpi_warmup_auto

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  963fe7b

Commits on Feb 28, 2020

• Updated include path to flattened Math

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• Merge remote-tracking branch 'origin/mpi_warmup_v2' into mpi_warmup_auto

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