Comparative_pipeline

Comparative genomics pipeline

Framework and analysis for comparative genomics

1. Domain profiling
2. Phylogenetic trees
3. Fast Ortholog Building
4. Summaries and queries of Ortholog sets

Dependancies

• For gather_hmmsearch_domain_counts - needs esl-sfetch from HMMER/Easel package if you want to generate multi-fasta files of the sequences which match domains.