Merge branch 'main' into 1.0

.github/workflows/continuous-integration.yml

@@ -32,23 +32,25 @@ jobs:
         experimental:
           - false
         include:
-          - python-version: "3.11.0-alpha.3"
+          - python-version: "3.11.0-alpha.7"
             os: ubuntu-latest
             experimental: true
-          - python-version: "3.11.0-alpha.3"
+          - python-version: "3.11.0-alpha.7"
             os: windows-latest
             experimental: true
-          - python-version: "3.11.0-alpha.3"
+          - python-version: "3.11.0-alpha.7"
             os: macos-latest
             experimental: true
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v4
         with:
           python-version: ${{ matrix.python-version }}
+          cache: 'pip'
+          cache-dependency-path: requirements-test.txt
 
       - uses: actions-rs/toolchain@v1
         # Wheels for orjson are not available for Python 3.11. This sets up the Rust
@@ -60,30 +62,6 @@ jobs:
           default: true
           profile: minimal
 
-      - name: Cache dependencies (Linux)
-        if: startsWith(runner.os, 'Linux')
-        uses: actions/cache@v2
-        with:
-          path: ~/.cache/pip
-          # Cache based on OS, Python version, and dependency hash
-          key: pip-test-${{ runner.os }}-python${{ matrix.python-version }}-${{ hashFiles('requirements-test.txt') }}
-
-      - name: Cache dependencies (macOS)
-        if: startsWith(runner.os, 'macOS')
-        uses: actions/cache@v2
-        with:
-          path: ~/Library/Caches/pip
-          # Cache based on OS, Python version, and dependency hash
-          key: pip-test-${{ runner.os }}-python${{ matrix.python-version }}-${{ hashFiles('requirements-test.txt') }}
-
-      - name: Cache dependencies (Windows)
-        if: startsWith(runner.os, 'Windows')
-        uses: actions/cache@v2
-        with:
-          path: ~\AppData\Local\pip\Cache
-          # Cache based on OS, Python version, and dependency hash
-          key: pip-test-${{ runner.os }}-python${{ matrix.python-version }}-${{ hashFiles('requirements-test.txt') }}
-
       - name: Install dependencies
         run: |
           pip install --upgrade pip
@@ -100,19 +78,14 @@ jobs:
     name: coverage
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - name: Set up Python 3.8
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v4
         with:
           python-version: "3.8"
-
-      - name: Cache dependencies
-        uses: actions/cache@v2
-        with:
-          path: ~/.cache/pip
-          # Cache based on OS, Python version, and dependency hash
-          key: pip-test-${{ runner.os }}-python3.8-${{ hashFiles('requirements-test.txt') }}
+          cache: 'pip'
+          cache-dependency-path: requirements-test.txt
 
       - name: Install dependencies
         run: |
@@ -131,7 +104,7 @@ jobs:
         run: coverage xml --fail-under 0
 
       - name: Upload All coverage to Codecov
-        uses: codecov/codecov-action@v2.1.0
+        uses: codecov/codecov-action@v3
         if: ${{ env.GITHUB_REPOSITORY }} == 'stac-utils/pystac'
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
@@ -154,22 +127,17 @@ jobs:
           - "3.8"
           - "3.9"
           - "3.10"
-          - "3.11.0-alpha.3"
+          - "3.11.0-alpha.7"
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v4
         with:
           python-version: ${{ matrix.python-version }}
-
-      - name: Cache dependencies
-        uses: actions/cache@v2
-        with:
-          path: ~/.cache/pip
-          # Cache based on OS, Python version, and dependency hash
-          key: lint-${{ runner.os }}-python${{ matrix.python-version }}-${{ hashFiles('requirements-test.txt') }}
+          cache: 'pip'
+          cache-dependency-path: requirements-test.txt
 
       - name: Install dependencies
         run: |
@@ -182,9 +150,9 @@ jobs:
   vanilla:
     runs-on: ubuntu-latest
     steps:  
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
-      - uses: actions/setup-python@v2
+      - uses: actions/setup-python@v4
         with:
           python-version: "3.8"
 

.github/workflows/release.yml

@@ -11,10 +11,10 @@ jobs:
     runs-on: ubuntu-latest
     if: ${{ github.repository }} == 'stac-utils/pystac'
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - name: Set up Python 3.x
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v4
         with:
           python-version: "3.x"
 

CHANGELOG.md

@@ -10,6 +10,33 @@
 
 ### Fixed
 
+## [v1.5.0]
+
+### Added
+
+- Enum MediaType entry for PDF documents ([#758](https://github.com/stac-utils/pystac/pull/758))
+- Enum MediaType entry for HTML documents ([#816](https://github.com/stac-utils/pystac/pull/816))
+- Updated Link to obtain stac_io from owner root ([#762](https://github.com/stac-utils/pystac/pull/762))
+- Replace test.com with special-use domain name. ([#769](https://github.com/stac-utils/pystac/pull/769))
+- Updated AssetDefinition to have create, apply methods ([#768](https://github.com/stac-utils/pystac/pull/768))
+- Add Grid Extension support ([#799](https://github.com/stac-utils/pystac/pull/799))
+- Rich HTML representations for Jupyter Notebook display ([#743](https://github.com/stac-utils/pystac/pull/743))
+- Add `assets` argument to `Item` and `Collection` init methods to allow adding Assets during object initialization ([#834](https://github.com/stac-utils/pystac/pull/834))
+
+### Changed
+
+- Updated Raster Extension from v1.0.0 to v1.1.0 ([#809](https://github.com/stac-utils/pystac/pull/809))
+
+### Fixed
+
+- Mutating `Asset.extra_fields` on a cloned `Asset` also mutated the original asset ([#826](https://github.com/stac-utils/pystac/pull/826))
+- "How to create STAC catalogs" tutorial ([#775](https://github.com/stac-utils/pystac/pull/775))
+- Add a `variables` argument, to accompany `dimensions`, for the `apply` method of stac objects extended with datacube ([#782](https://github.com/stac-utils/pystac/pull/782))
+- Deepcopy collection properties on clone. Implement `clone` method for `Summaries` ([#794](https://github.com/stac-utils/pystac/pull/794))
+- Collection assets are now preserved when using `Collection.clone` ([#834](https://github.com/stac-utils/pystac/pull/834))
+- Docstrings for `StacIO.read_text` and `StacIO.write_text` now match the type annotations for the `source` argument. ([#835](https://github.com/stac-utils/pystac/pull/835))
+- UTC timestamps now always have `tzutc` timezone even when system timezone is set to UTC. ([#848](https://github.com/stac-utils/pystac/pull/848))
+
 ## [v1.4.0]
 
 ### Added
@@ -575,7 +602,8 @@ use `Band.create`
 
 Initial release.
 
-[Unreleased]: <https://github.com/stac-utils/pystac/compare/v1.4.0..main>
+[Unreleased]: <https://github.com/stac-utils/pystac/compare/v1.5.0..main>
+[v1.5.0]: <https://github.com/stac-utils/pystac/compare/v1.4.0..v1.5.0>
 [v1.4.0]: <https://github.com/stac-utils/pystac/compare/v1.3.0..v1.4.0>
 [v1.3.0]: <https://github.com/stac-utils/pystac/compare/v1.2.0..v1.3.0>
 [v1.2.0]: <https://github.com/stac-utils/pystac/compare/v1.1.0..v1.2.0>

README.md

@@ -1,6 +1,7 @@
 ## PySTAC
 ![Build Status](https://github.com/stac-utils/pystac/workflows/CI/badge.svg?branch=main)
 [![PyPI version](https://badge.fury.io/py/pystac.svg)](https://badge.fury.io/py/pystac)
+[![Conda (channel only)](https://img.shields.io/conda/vn/conda-forge/pystac)](https://anaconda.org/conda-forge/pystac)
 [![Documentation](https://readthedocs.org/projects/pystac/badge/?version=latest)](https://pystac.readthedocs.io/en/latest/)
 [![codecov](https://codecov.io/gh/stac-utils/pystac/branch/main/graph/badge.svg)](https://codecov.io/gh/stac-utils/pystac)
 [![Gitter](https://badges.gitter.im/SpatioTemporal-Asset-Catalog/python.svg)](https://gitter.im/SpatioTemporal-Asset-Catalog/python?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge)
@@ -20,7 +21,9 @@ Note that while we support Python 3.10.\*, wheels for the `orjson` library are n
 platforms. If you install PySTAC with the `orjson` extra, you may need to have the Rust toolchain installed (e.g. via [rustup](https://rustup.rs/)) in order to
 build the package from source.
 
-Support for Python 3.11 should be considered experimental until further notice.
+Support for Python 3.11 should be considered experimental until further notice. There is a known issue with failing build of `orjson` on 3.11.0 alpha releases prior to alpha.6 (see
+[#765(comment)](https://github.com/stac-utils/pystac/pull/765#pullrequestreview-908908772) for
+some additional detail).
 
 PySTAC has a single required dependency (`python-dateutil`).
 PySTAC can be installed from pip or the source repository.

docs/concepts.rst

@@ -279,7 +279,7 @@ for reading from AWS's S3 cloud object storage using `boto3
    from pystac.stac_io import DefaultStacIO, StacIO
 
    class CustomStacIO(DefaultStacIO):
-      def __init__():
+      def __init__(self):
          self.s3 = boto3.resource("s3")
 
       def read_text(
@@ -302,8 +302,7 @@ for reading from AWS's S3 cloud object storage using `boto3
          if parsed.scheme == "s3":
             bucket = parsed.netloc
             key = parsed.path[1:]
-            s3 = boto3.resource("s3")
-            s3.Object(bucket, key).put(Body=txt, ContentEncoding="utf-8")
+            self.s3.Object(bucket, key).put(Body=txt, ContentEncoding="utf-8")
          else:
             super().write_text(dest, txt, *args, **kwargs)
 
@@ -322,7 +321,7 @@ to take advantage of connection pooling using a `requests.Session
    from pystac.stac_io import DefaultStacIO, StacIO
 
    class ConnectionPoolingIO(DefaultStacIO):
-      def __init__():
+      def __init__(self):
          self.session = requests.Session()
 
       def read_text(

docs/conf.py

@@ -17,7 +17,6 @@
 import subprocess
 from typing import Any, Dict, List
 
-from sphinx.util import logging
 
 sys.path.insert(0, os.path.abspath("."))
 sys.path.insert(0, os.path.abspath("../"))
@@ -239,11 +238,3 @@
 # -- Substutition variables
 
 rst_epilog = f".. |stac_version| replace:: {STACVersion.DEFAULT_STAC_VERSION}"
-
-# -- Suppress warnings from the extlinks extension
-# We do this to avoid warnings like the following in our Jupyter notebook tutorials
-# where we do not want to use Sphinx constructs:
-# WARNING: hardcoded link 'https://github.com/stac-extensions/eo' could be replaced
-# by an extlink (try using ':stac-ext:`eo`' instead)
-linklogger = logging.getLogger("sphinx.ext.extlinks")
-linklogger.setLevel(40)  # Ignore messages less severe than ERROR