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EXP: try out lower level pyo3 API #552

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EXP: try out lower level pyo3 API #552

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@ctb ctb commented Dec 21, 2024

This PR started from #428, and is working (potentially long term 😅 ) to add an intermediate container-level pyo3-based Python API into the branchwater plugin.

TODO:

  • benchmark CLI functions again!

@ctb ctb changed the title EXP: steal code from branch_api EXP: try out lower level pyo3 API Dec 21, 2024
@ctb ctb changed the base branch from main to refactor_gather_csv January 3, 2025 17:44
ctb added a commit that referenced this pull request Jan 7, 2025
…onality (#569)

* refactor CSV output for fastgather/fastmultigather to use mpsc

* cargo fmt

* tests mostly pass

* fix skipmer test

* upd comment

* black

* switch to min_max_scaled for rocksdb

* black

* ensure overlap is > 0

* rm print

* cleanup

* fix clippy messages about too-complex returns

* cargo fmt

* separate out Rust API changes from #552

* upd overlap

* fix

* fix

* remove remaining Box/error stuff

* remove remaining join => Err

* clean up error handling a bit

* refactor out loading of sketches

* fix tests

* update docs

* upd

* break test again

* do heinous dev stuff

* fix fix comment

* upd

* upd

* do not require -o after all

* fix for crate_empty_results

* fmt

* remove @ctb notes

* remove obligatory clone from Rust layer
Base automatically changed from factor_out_rust_api to main January 7, 2025 16:00
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