Matlab script to count spots in cells using difference of gaussian filter. We use ilastik for simple cell segmentation.
We used the 2dgauss301, bfmatlab, natsortfiles and the violin plot packages online.
https://www.mathworks.com/matlabcentral/fileexchange/45134-violin-plot https://www.mathworks.com/matlabcentral/fileexchange/47434-natural-order-filename-sort https://docs.openmicroscopy.org/bio-formats/5.8.2/users/matlab/index.html