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Freie Universitaet Berlin
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chopper Public
Forked from seqan/chopperA tool for partitioning a set of sequences into similar batches.
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raptor Public
Forked from seqan/raptorA fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
C++ BSD 3-Clause "New" or "Revised" License UpdatedSep 19, 2024 -
Hierarchical_Interleaved_Bloomfilter Public
Forked from seqan/hibfHIBF and IBF
C++ Other UpdatedSep 11, 2024 -
kmindex_benchmarks Public
Forked from pierrepeterlongo/kmindex_benchmarksPython UpdatedMay 16, 2024 -
app-template Public template
Forked from seqan/app-templateThis is a template for app developers with SeqAn3. You can easily clone this repository and modify the existing code to your needs. It provides the elementary set-up for all SeqAn3 applications.
CMake Other UpdatedMar 22, 2024 -
ScavengerHunt Public
Forked from seqan/ScavengerHuntTeaching material for a unix introduction course
Shell UpdatedMar 4, 2024 -
sharg-parser Public
Forked from seqan/sharg-parserTHE argument parser for bio-c++ tools.
C++ Other UpdatedNov 27, 2023 -
seqan3 Public
Forked from seqan/seqan3The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
C++ Other UpdatedNov 27, 2023 -
b.i.o. Public
Forked from biocpp/biocpp-ioThe Biological Input-Output library
C++ BSD 3-Clause "New" or "Revised" License UpdatedNov 27, 2023 -
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Mash Public
Forked from marbl/MashFast genome and metagenome distance estimation using MinHash
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SViper Public
Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
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tool_description_lib Public
Forked from deNBI-cibi/tool_description_libA library to output tool description files like CTD or CWL
C++ Other UpdatedNov 17, 2021 -
Chopper-old Public archive
A tool to partition a set of sequences into similar batches.
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awesome-modern-cpp Public
Forked from rigtorp/awesome-modern-cppA collection of resources on modern C++
HTML UpdatedOct 13, 2020 -
usage_plots Public
Forked from OpenMS/usage_plotsScripts for generating plots about the usage of OpenMS
Python UpdatedSep 15, 2020 -
learning-resources Public
Forked from seqan/learning-resourcesProvides online material and tutorials for modern C++, efficient data structures and algorithms.
C++ Other UpdatedJan 27, 2020 -
sdsl-lite Public
Forked from xxsds/sdsl-liteSuccinct Data Structure Library 3.0 (unstable, prerelease)
C++ Other UpdatedFeb 6, 2019 -
SeqAn3_read_mapper Public
Forked from eseiler/SeqAn3_read_mapperC++ BSD 3-Clause "New" or "Revised" License UpdatedSep 25, 2018 -
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CellTracker Public
Forked from Lab513/CellTrackerHough Transform to segment and track yeast cells
MATLAB BSD 3-Clause "New" or "Revised" License UpdatedJun 4, 2015