Merge pull request #4 from smart-on-fhir/mikix/coverage #19
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name: CI | |
on: | |
pull_request: | |
push: | |
branches: | |
- main | |
# The goal here is to cancel older workflows when a PR is updated (because it's pointless work) | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.head_ref || github.ref_name }} | |
cancel-in-progress: true | |
jobs: | |
unittest: | |
name: unit tests | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ["3.9", "3.10", "3.11", "3.12"] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install ".[tests]" | |
- name: Test with pytest | |
run: | | |
python -m pytest --cov=cumulus_fhir_support --cov-report=xml | |
- name: Check coverage report | |
if: github.ref != 'refs/heads/main' | |
uses: orgoro/[email protected] | |
with: | |
coverageFile: coverage.xml | |
token: ${{ secrets.GITHUB_TOKEN }} | |
thresholdAll: .99 | |
thresholdNew: 1 | |
thresholdModified: 1 | |
lint: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install linters | |
# black is synced with the .pre-commit-hooks version | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install .[dev] bandit[toml] pycodestyle pylint | |
- name: Run pycodestyle | |
# E203: pycodestyle is a little too rigid about slices & whitespace | |
# See https://black.readthedocs.io/en/stable/the_black_code_style/current_style.html#slices | |
# W503: a default ignore that we are restoring | |
run: | | |
pycodestyle --max-line-length=100 --ignore=E203,W503 . | |
- name: Run pylint | |
if: success() || failure() # still run pylint if above checks fail | |
run: | | |
pylint cumulus_fhir_support tests | |
- name: Run bandit | |
if: success() || failure() # still run bandit if above checks fail | |
run: | | |
bandit -c pyproject.toml -r . | |
- name: Run black | |
if: success() || failure() # still run black if above checks fails | |
run: | | |
black --check --verbose . |