Merge pull request #3 from smart-on-fhir/mikix/ndjson #16
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| name: CI | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| # The goal here is to cancel older workflows when a PR is updated (because it's pointless work) | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.ref_name }} | |
| cancel-in-progress: true | |
| jobs: | |
| unittest: | |
| name: unit tests | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install ".[tests]" | |
| - name: Test with pytest | |
| run: | | |
| python -m pytest | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install linters | |
| # black is synced with the .pre-commit-hooks version | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install .[dev] bandit[toml] pycodestyle pylint | |
| - name: Run pycodestyle | |
| # E203: pycodestyle is a little too rigid about slices & whitespace | |
| # See https://black.readthedocs.io/en/stable/the_black_code_style/current_style.html#slices | |
| # W503: a default ignore that we are restoring | |
| run: | | |
| pycodestyle --max-line-length=100 --ignore=E203,W503 . | |
| - name: Run pylint | |
| if: success() || failure() # still run pylint if above checks fail | |
| run: | | |
| pylint cumulus_fhir_support tests | |
| - name: Run bandit | |
| if: success() || failure() # still run bandit if above checks fail | |
| run: | | |
| bandit -c pyproject.toml -r . | |
| - name: Run black | |
| if: success() || failure() # still run black if above checks fails | |
| run: | | |
| black --check --verbose . |