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add IBioIC calendar and automate calendars
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widdowquinn committed May 21, 2024
1 parent d5367db commit 918a768
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4 changes: 3 additions & 1 deletion _quarto.yml
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Expand Up @@ -18,8 +18,10 @@ website:
file: index.qmd
- text: "Project Guidance"
menu:
- text: "Key Dates"
- text: "Key Dates (BM954)"
href: calendar.qmd
- text: "Key Dates (IBioIC)"
href: calendar_ibioic.qmd
- text: "Project Expectations"
href: expectations.qmd
- text: "Project and Time Management"
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4 changes: 3 additions & 1 deletion _variables.yml
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Expand Up @@ -9,4 +9,6 @@ myplace:
course: "BM954: SIPBS MSc Research Project"
link: "https://classes.myplace.strath.ac.uk/course/view.php?id=14929"
timeline: "https://classes.myplace.strath.ac.uk/mod/resource/view.php?id=1973735"
guidelines: "https://classes.myplace.strath.ac.uk/mod/resource/view.php?id=1974201"
guidelines: "https://classes.myplace.strath.ac.uk/mod/resource/view.php?id=1974201"
link_ibioic: "https://classes.myplace.strath.ac.uk/course/view.php?id=22646"
timeline_ibioic: "https://classes.myplace.strath.ac.uk/mod/resource/view.php?id=1929690"
28 changes: 28 additions & 0 deletions assets/calendars/bm954_calendar.csv
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@@ -0,0 +1,28 @@
Week,Date/Time,Activity,Responsibility
1,w/b Mon 20/5,Suggested activities <br> - Students contact supervisors <br> - Read papers in project description <br> - Begin literature search <br> - Install and configure bioinformatics tools
1,Thu 23/9 <br> TBC,Project Group Meeting <br> - Introductions <br> - Project descriptions <br> - Project expectations <br> - Learning agreement <br> - Project management resources,LP
2,w/b Mon 27/5,Suggested activities <br> - Continue literature search <br> - Practice project management tools <br> - Practice computational and bioinformatics tools
2,Mon 27/5 <br> TBC,Project Group Meeting <br> - Discuss tasks for next week (incl. choose one paper each for mini journal club) <br> - Computational and bioinformatics tools,LP
3,w/b Mon 3/6,Suggested activities <br> - Continue literature search <br> - Practice computational and bioinformatics tools <br> - Begin project work
3,Tue 4/6 <br> TBC,Project Group Meeting <br> - Mini journal club. Each student leads a short (15min) discussion of their chosen paper <br> - Discuss project progress,LP
4,w/b Mon 10/6,Suggested activities <br> - Continue project work <br> - Write thesis introduction
4,Mon 10/6 <br> TBC,Project Group Meeting <br> - How to write a project thesis <br> - Discuss project progress,LP
4,Thu 13/6,Submit draft Introduction/Literature Review,Students
5,w/b Mon 17/6,Suggested activities <br> - Continue literature search <br> - Writing thesis outline
5,Mon 17/6 <br> TBC,Project Group Meeting <br> - Discussion of thesis outlines <br> - Project planning discussion,LP
6,w/b Mon 24/6,Suggested activities <br> - Project work
6,Fri 27/10 <br> 14:00-15:00 <br> HW324,Project Group Meeting <br> - Project planning discussion <br> - Discussion of thesis outlines,LP
7,w/b Mon 1/7,Suggested activities <br> - Project work
7,Mon 1/7 - Fri 5/7,LP Unavailable (annual leave)
8,w/b Mon 6/11,Suggested activities <br> - Project work
8,Fri 12/7,Official lab work end date
9,w/b Mon 15/7,Suggested activities <br> - Writing thesis
9,Mon 15/7 - Fri 19/7,LP Unavailable (annual leave)
9,Fri 19/7,Draft thesis submission deadline,Students
10,w/b Mon 22/7,Suggested activities <br> - Writing thesis/presentation
10,Mon 22/7 <br> TBC,Project Group Meeting <br> - Project updates and discussion,LP
11,w/b Mon 29/7,Suggested activities <br> - Writing thesis/presentation
11,Mon 29/7,Draft thesis feedback return
12,w/b Mon 5/8,- Presentations (TBC)
12,Mon 5/8,Final thesis submission deadline,Students
13,w/b Mon 12/8,- Presentations (TBC)
10 changes: 10 additions & 0 deletions assets/calendars/ibioic_calendar.csv
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@@ -0,0 +1,10 @@
Week,Date,Activity,Responsibility
1,w/b 29th April,Face-to-face meeting between academic supervisor and student,Student
4,w/b 20th May,Placement starts,
7,w/b 3rd June,Submission of literature review to academic supervisor(s),Student
9,w/b 17th June,Feedback on literature review (expected),Academic Supervisor
16,w/b 5th August,Draft thesis submission,Student
17,w/b 12th August,Feedback on draft thesis,Academic Supervisor
18,w/b 19th August,Submission of final thesis,Student
18,Wed 21st August,Submission of MSc presentation to IBioIC team,Student
18,Thu 22nd August,Thesis presentation day,Student
48 changes: 18 additions & 30 deletions calendar.qmd
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Expand Up @@ -2,7 +2,7 @@
title: "Key Dates"
image: ./assets/images/key_dates.jpg
description: |
Key Dates for {{< var ay >}} BM954 Final Year Projects
Key Dates for {{< var ay >}} BM954 BMS MSc Projects
tbl-colwidths: [5, 10, 50, 5]
number-sections: true
about:
Expand All @@ -21,6 +21,13 @@ html:
anchor-sections: true
---

```{r}
#| context: setup
#| echo: false
library(kableExtra)
```

- BM954 Project Timeline [(MyPlace {{< bi link >}})]({{< var myplace.timeline >}})

## Calendar
Expand All @@ -33,32 +40,13 @@ This is an **indicative** calendar for SIPBS CompBiol Group BM954 projects in {{

### Summer {{< var ay >}}

| Week | Date/Time | Activity | Responsibility |
| ----- | :----------- | :------------------------------------- | :------------: |
| **1** | w/b Mon 20/5 | **Suggested activities** <br> - Students contact supervisors <br> - Read papers in project description <br> - Begin literature search <br> - Install and configure bioinformatics tools | |
| **1** | **Thu 23/9** <br> TBC | **Project Group Meeting** <br> - Introductions <br> - Project descriptions <br> - Project expectations <br> - Learning agreement <br> - Project management resources | **LP**
| **2** | w/b Mon 27/5 | **Suggested activities** <br> - Continue literature search <br> - Practice project management tools <br> - Practice computational and bioinformatics tools | |
| **2** | **Mon 27/5** <br> TBC | **Project Group Meeting** <br> - Discuss tasks for next week (incl. choose one paper each for mini journal club) <br> - Computational and bioinformatics tools | **LP** |
| **3** | w/b Mon 3/6 | **Suggested activities** <br> - Continue literature search <br> - Practice computational and bioinformatics tools <br> - Begin project work | |
| **3** | **Tue 4/6** <br> TBC | **Project Group Meeting** <br> - Mini journal club. Each student leads a short (15min) discussion of their chosen paper <br> - Discuss project progress | **LP** |
| **4** | w/b Mon 10/6 | **Suggested activities** <br> - Continue project work <br> - Write thesis introduction | |
| **4** | **Mon 10/6** <br> TBC | **Project Group Meeting** <br> - How to write a project thesis <br> - Discuss project progress | **LP** |
| **4** | **Thu 13/6** | **Submit draft Introduction/Literature Review** | **Students** |
| **5** | w/b Mon 17/6 | **Suggested activities** <br> - Continue literature search <br> - Writing thesis outline | |
| **5** | **Mon 17/6** <br> TBC | **Project Group Meeting** <br> - Discussion of thesis outlines <br> - Project planning discussion | **LP** |
| **6** | w/b Mon 24/6 | **Suggested activities** <br> - Project work | |
| **6** | **Fri 27/10** <br> 14:00-15:00 <br> HW324 | **Project Group Meeting** <br> - Project planning discussion <br> - Discussion of thesis outlines | **LP** |
| **7** | w/b Mon 1/7 | **Suggested activities** <br> - Project work | |
| **7** | Mon 1/7 - Fri 5/7 | **LP Unavailable** (annual leave) | |
| **8** | w/b Mon 6/11 | **Suggested activities** <br> - Project work | |
| **8** | Fri 12/7 | **Official lab work end date** | |
| **9** | w/b Mon 15/7 | **Suggested activities** <br> - Writing thesis | |
| **9** | Mon 15/7 - Fri 19/7 | **LP Unavailable** (annual leave) | |
| **9** | Fri 19/7 | **Draft thesis submission deadline** | **Students** |
| **10** | w/b Mon 22/7 | **Suggested activities** <br> - Writing thesis/presentation | |
| **10** | **Mon 22/7** <br> TBC | **Project Group Meeting** <br> - Project updates and discussion | **LP** |
| **11** | w/b Mon 29/7 | **Suggested activities** <br> - Writing thesis/presentation | |
| **11** | Mon 29/7 | **Draft thesis feedback return** | |
| **12** | w/b Mon 5/8 | - Presentations (TBC) | |
| **12** | **Mon 5/8** | **Final thesis submission deadline** | **Students** |
| **13** | w/b Mon 12/8 | - Presentations (TBC) | |
```{r}
#| echo: False
data <- read.csv("assets/calendars/bm954_calendar.csv")
data %>% kable(data="html", escape=F, align="cllc") %>%
row_spec(row = 0, color = "white", background = "darkolivegreen") %>%
column_spec(1, bold=TRUE) %>%
column_spec(4, bold=TRUE)
```
52 changes: 52 additions & 0 deletions calendar_ibioic.qmd
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@@ -0,0 +1,52 @@
---
title: "Key Dates"
image: ./assets/images/key_dates.jpg
description: |
Key Dates for {{< var ay >}} BM954 IBioIC Projects
tbl-colwidths: [5, 10, 50, 5]
number-sections: true
about:
template: marquee
links:
- icon: twitter
text: Twitter
href: https://twitter.com/scompbiol
- icon: github
text: Github
href: https://github.com/sipbs-compbiol
- icon: envelope
text: Email
href: mailto:[email protected]
html:
anchor-sections: true
---

```{r}
#| context: setup
#| echo: false
library(kableExtra)
```

- IBioIC Project Timeline [(MyPlace {{< bi link >}})]({{< var myplace.timeline_ibioic >}})

## Calendar

This is an **indicative** calendar for SIPBS CompBiol Group IBioIC project supervision in {{< var ay >}}.

::: {.callout-warning}
**This calendar is indicative only and subject to change**. Please consult with the official course [MyPlace]({{< var myplace.link >}}) page for submission dates, deadlines, and other timings. Links to useful documents are provided above.
:::

### Summer {{< var ay >}}

```{r}
#| echo: False
data <- read.csv("assets/calendars/ibioic_calendar.csv")
kable(data, align="cllc") %>%
row_spec(row = 0, color = "white", background = "darkolivegreen") %>%
column_spec(1, bold=TRUE) %>%
column_spec(4, bold=TRUE)
```

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