r-valgrind #327
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| name: r-valgrind | |
| on: | |
| # allows for 'as needed' manual trigger | |
| workflow_dispatch: | |
| # use a regular nighly build as well (time is UTC) | |
| schedule: | |
| - cron: "23 4 * * *" | |
| jobs: | |
| r-valgrind: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: rocker/r2u:latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: SessionInfo | |
| run: R -q -e 'sessionInfo()' | |
| - name: System Dependencies | |
| run: apt update -qq && apt upgrade --yes && apt install --yes --no-install-recommends valgrind cmake git | |
| - name: Set additional repositories (Linux) | |
| run: | | |
| rversion <- paste(strsplit(as.character(getRversion()), split = '\\.')[[1L]][1:2], collapse = '.') | |
| codename <- system('. /etc/os-release; echo ${VERSION_CODENAME}', intern = TRUE) | |
| repo <- "https://tiledb-inc.r-universe.dev" | |
| (opt <- sprintf('options(repos = c("%s/bin/linux/%s/%s", "%s", getOption("repos")), timeout = 300L)', repo, codename, rversion, repo)) | |
| cat(opt, "\n", file = "~/.Rprofile", append = TRUE) | |
| shell: Rscript {0} | |
| - name: Install tiledb-r | |
| run: cd apis/r && Rscript tools/install-tiledb-r.R | |
| - name: Package Dependencies | |
| run: cd apis/r && R -q -e 'remotes::install_deps(".", dependencies=TRUE, upgrade=FALSE)' | |
| - name: Build Package | |
| run: cd apis/r && R CMD build --no-build-vignettes --no-manual . | |
| - name: Check Package under valgrind | |
| # we unsetting environment variable CI for non-extended set of tests | |
| run: cd apis/r && CI="" VALGRIND_OPTS="-s --leak-check=full --max-threads=1024" R CMD check --use-valgrind --no-vignettes --no-manual $(ls -1tr *.tar.gz | tail -1) | |
| - name: Display Test Output | |
| run: cd apis/r/tiledbsoma.Rcheck/tests && cat testthat.Rout |