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Bump version: 1.0.9 → 1.1.0
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sigven committed Jun 10, 2022
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2 changes: 1 addition & 1 deletion .bumpversion.cfg
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[bumpversion]
current_version = 1.0.9
current_version = 1.1.0
commit = True
tag = False

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2 changes: 1 addition & 1 deletion .github/workflows/pkgdown.yaml
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workflow_dispatch:

env:
VERSION: '1.0.9' #versioned by bump2version
VERSION: '1.1.0' #versioned by bump2version

name: pkgdown

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2 changes: 1 addition & 1 deletion DESCRIPTION
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Package: oncoEnrichR
Type: Package
Title: Cancer-dedicated gene set interpretation
Version: 1.0.9
Version: 1.1.0
Date: 2022-06-10
Authors@R:
c(person(given = "Sigve",
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2 changes: 1 addition & 1 deletion README.md
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**oncoEnrichR** is an R package for functional interrogation of human genesets in the context of cancer. The package leverages an extensive amount of prior molecular knowledge for geneset interpretation along multiple dimensions.

Web-based access to **oncoEnrichR** is available at [**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.0.9)
Web-based access to **oncoEnrichR** is available at [**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.1.0)

**oncoEnrichR** is primarily intended for exploratory analysis and prioritization of a gene list (referred to here as **query set**) from high-throughput cancer biology experiments, e.g. genetic screens (siRNA/CRISPR), protein proximity labeling, or transcriptomics (differential expression). The tool queries a number of high-quality data resources in order to assemble useful gene annotations and analyses in an interactive report.

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2 changes: 1 addition & 1 deletion pkgdown/index.md
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**oncoEnrichR** can be used to interrogate results from e.g. genetic screens (siRNA/CRISPR), protein proximity labeling, or transcriptomics (differential expression). The tool queries a variety of high-quality data resources in order to assemble useful gene annotations and analyses in an interactive report (examples from the report shown below).

Web-based access to **oncoEnrichR** is available at <font size="4"> **[https://oncotools.elixir.no](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.0.9)**</font>
Web-based access to **oncoEnrichR** is available at <font size="4"> **[https://oncotools.elixir.no](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.1.0)**</font>

<br>

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2 changes: 1 addition & 1 deletion vignettes/installation.Rmd
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---

1. `install.packages('devtools')`
2. `devtools::install_github('sigven/oncoEnrichR', ref = "v1.0.9")`
2. `devtools::install_github('sigven/oncoEnrichR', ref = "v1.1.0")`
3. `library(oncoEnrichR)`

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