Project Information

• The project is currently at a stage where the bio modules are being added
• Both mllibs and biopylib share the same NLP interpreter

This package aims to:

• Minimise/remove the need for required coding from the users end
• This is achieved by interpreting & analysing the input (desired series of operations) using NLP methods

Brief change Log:

• 0.0.9 : Added Single Cell Experiment Class
• 0.0.8 : Added Deterministic Motif Discovery Classes
• 0.0.7 : Added GenBank reader

Versions

Kaggle	Github	PyPI
biopylib 0.0.8	biopylib 0.0.8

src contents:

biopylib package file	description
blast	BLAST sequence query operations
read_sequence	Biological sequence file read/write operations
sequence	Biological sequence operations
sequence_alignment	Biological sequence alignment operations
sce	Single Cell Experiment Analysis (SCE) operations (v0.09)
motif	Deterministic & Probabilistic Motif Discovery operations

biopylib notebooks:

You can fork and test the latest versions:

Notebook	Description
biopylib playground	Main Testing Notebook
Biological Sequence Operations	Operations usising blast, read_sequence, sequence classes
Biological Sequence Alignment	Operations using read_sequence, sequence_alignment classes)

Package Related Operations:

Prepare whl file using:

python setup.py bdist_wheel --universal

Install in notebook via:

!pip install /path/