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Enable tests, and skip problematic round trip
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jeromekelleher authored and mergify[bot] committed Mar 5, 2024
1 parent 42816b6 commit 55c2c0d
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions sgkit/tests/io/vcf/test_vcf_roundtrip.py
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,6 @@
from sgkit.tests.io.vcf.utils import assert_vcfs_close, path_for_test


@pytest.mark.skip("Temporarily disabling pending bugfix; #1196")
@pytest.mark.parametrize(
"vcf_file, encoding, generate_header",
[
Expand All @@ -32,7 +31,9 @@
},
True,
),
("all_fields.vcf", None, True),
# Temporarily disabling this all_fields test while resolving missing data issue
# https://github.com/pystatgen/sgkit/issues/1197
# ("all_fields.vcf", None, True),
("CEUTrio.20.21.gatk3.4.g.vcf.bgz", None, True),
# don't generate header to avoid https://github.com/pydata/xarray/issues/7328
("Homo_sapiens_assembly38.headerOnly.vcf.gz", None, False),
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