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seung-lab

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 429 46

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 260 39

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 179 30

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 164 52

  5. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 111 31

  6. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 32

Repositories

Showing 10 of 185 repositories
  • osteoid Public

    Skeleton object used for representing neurons, adjacent cells, and organelles.

    seung-lab/osteoid’s past year of commit activity
    C++ 3 BSD-3-Clause 2 2 0 Updated Nov 11, 2025
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    seung-lab/neuroglancer’s past year of commit activity
    TypeScript 24 Apache-2.0 345 91 37 Updated Nov 11, 2025
  • abiss Public

    Affinity based image segmentation system

    seung-lab/abiss’s past year of commit activity
    C++ 5 GPL-3.0 2 0 1 Updated Nov 11, 2025
  • DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    seung-lab/DracoPy’s past year of commit activity
    C++ 111 Apache-2.0 31 11 2 Updated Nov 10, 2025
  • kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    seung-lab/kimimaro’s past year of commit activity
    C++ 179 GPL-3.0 30 15 0 Updated Nov 5, 2025
  • dijkstra3d Public

    Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes

    seung-lab/dijkstra3d’s past year of commit activity
    C++ 83 GPL-3.0 14 7 1 Updated Nov 5, 2025
  • CAVEpipelines Public

    Instructions for creating chunkedgraph, initial meshing, l2cache etc

    seung-lab/CAVEpipelines’s past year of commit activity
    HCL 5 MPL-2.0 5 0 3 Updated Nov 5, 2025
  • crackle Public

    3D dense segmentation compression codec based on crack codes.

    seung-lab/crackle’s past year of commit activity
    C++ 11 BSD-3-Clause 1 11 1 Updated Nov 4, 2025
  • connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    seung-lab/connected-components-3d’s past year of commit activity
    C++ 429 LGPL-3.0 46 14 4 Updated Nov 2, 2025
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    seung-lab/cloud-volume’s past year of commit activity
    Python 164 BSD-3-Clause 52 84 5 Updated Oct 31, 2025

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