Merge pull request #3019 from eseiler/fix/api_final

[FIX] API ABI warning

test/api_stability/3.1.0/0001-API-BREAKAGE-views-to-ranges-to.patch

@@ -1,7 +1,7 @@
-From d3d37b0f3f79074d3f3a75418b3559f8c2750972 Mon Sep 17 00:00:00 2001
+From c17b5b026c1646b25393156e77f6a86ffbd89dbb Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Mon, 13 Jun 2022 16:42:25 +0200
-Subject: [PATCH 01/11] [API] [BREAKAGE] views::to -> ranges::to
+Subject: [PATCH 01/12] [API] [BREAKAGE] views::to -> ranges::to
 
 ---
  doc/tutorial/alphabet/alphabet_gc_content.cpp  |  2 +-

test/api_stability/3.1.0/0002-NOAPI-DETAIL-Remove-STL-tests.patch

@@ -1,7 +1,7 @@
-From 4668cc467c1c78afb7426f2f122956a94c07f6b4 Mon Sep 17 00:00:00 2001
+From b34296417c548d3f9110daa8c57ecc6795a6224b Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Mon, 13 Jun 2022 16:44:30 +0200
-Subject: [PATCH 02/11] [NOAPI] [DETAIL] Remove STL tests
+Subject: [PATCH 02/12] [NOAPI] [DETAIL] Remove STL tests
 
 ---
  .../seqan3/test/concept_helper_classes.hpp    | 165 ++++++++++++

test/api_stability/3.1.0/0003-NOAPI-DETAIL-Remove-range-v3.patch

@@ -1,7 +1,7 @@
-From 3a6cc9851cda27e9592194c3c7131d32b9fdb0e0 Mon Sep 17 00:00:00 2001
+From 0fc9660ef2c0f42954a1210c312c85107502a546 Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Mon, 13 Jun 2022 16:46:16 +0200
-Subject: [PATCH 03/11] [NOAPI] [DETAIL] Remove range-v3
+Subject: [PATCH 03/12] [NOAPI] [DETAIL] Remove range-v3
 
 ---
  test/include/seqan3/test/seqan2.hpp              | 16 ----------------

test/api_stability/3.1.0/0004-NOAPI-DETAIL-Concept-definitions.patch

@@ -1,7 +1,7 @@
-From e71b59bfcd3b1f660314c0a6659a9367b9432c63 Mon Sep 17 00:00:00 2001
+From d5450d6435accfca62fea75dcf32689b3f96375d Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Mon, 13 Jun 2022 16:46:40 +0200
-Subject: [PATCH 04/11] [NOAPI] [DETAIL] Concept definitions
+Subject: [PATCH 04/12] [NOAPI] [DETAIL] Concept definitions
 
 ---
  test/unit/core/detail/iterator_traits_test.cpp | 4 ++--

test/api_stability/3.1.0/0005-NOAPI-DETAIL-Unused-variables.patch

@@ -1,7 +1,7 @@
-From 76abe0f0056f9f88fa5115553fd7f3829e661b82 Mon Sep 17 00:00:00 2001
+From 9c71f743217efb5728722fbe3eb11bf9a1efe66e Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Mon, 13 Jun 2022 16:46:56 +0200
-Subject: [PATCH 05/11] [NOAPI] [DETAIL] Unused variables
+Subject: [PATCH 05/12] [NOAPI] [DETAIL] Unused variables
 
 ---
  test/snippet/alphabet/views/translate_usage.cpp   | 15 ++++++++-------

test/api_stability/3.1.0/0006-NOAPI-DETAIL-Include-md-instead-of-hpp.patch

@@ -1,7 +1,7 @@
-From f68e939a9a9f244d06d469f65501b7068c5183f8 Mon Sep 17 00:00:00 2001
+From e9f52b45e92826638b6b3ba2e0c918b68f712bb5 Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Mon, 13 Jun 2022 16:47:10 +0200
-Subject: [PATCH 06/11] [NOAPI] [DETAIL] Include md instead of hpp
+Subject: [PATCH 06/12] [NOAPI] [DETAIL] Include md instead of hpp
 
 ---
  test/snippet/CMakeLists.txt | 2 +-

test/api_stability/3.1.0/0007-NOAPI-DETAIL-container-concept.patch

@@ -1,7 +1,7 @@
-From 8172bf5a2d482d210f8ea4a71d61482611aa0ad3 Mon Sep 17 00:00:00 2001
+From 4925137c30f4beb682c3ceb2532d5106b5bdc2c0 Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Mon, 13 Jun 2022 17:19:37 +0200
-Subject: [PATCH 07/11] [NOAPI] [DETAIL] container concept
+Subject: [PATCH 07/12] [NOAPI] [DETAIL] container concept
 
 ---
  test/unit/alphabet/container/container_of_container_test.cpp | 1 -

test/api_stability/3.1.0/0008-API-FIX-flags-must-be-false.patch

@@ -1,7 +1,7 @@
-From d56d85a942a284253434039f5851922171d28a93 Mon Sep 17 00:00:00 2001
+From d7afc1ac49b603118cd36bb495ca8ad1156ebfcf Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Mon, 13 Jun 2022 17:24:30 +0200
-Subject: [PATCH 08/11] [API] [FIX] flags must be false
+Subject: [PATCH 08/12] [API] [FIX] flags must be false
 
 ---
  .../argument_parser_design_error_test.cpp     |  55 +++++-----

test/api_stability/3.1.0/0009-NOAPI-DETAIL-Update-copyright-year.patch

@@ -1,7 +1,7 @@
-From 8c4d8576d6d5678dc0ba22422078ceb813321f6c Mon Sep 17 00:00:00 2001
+From 4e5211678e028952ee165d0b8330b068e1370813 Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Mon, 13 Jun 2022 17:25:43 +0200
-Subject: [PATCH 09/11] [NOAPI] [DETAIL] Update copyright year
+Subject: [PATCH 09/12] [NOAPI] [DETAIL] Update copyright year
 
 ---
  .../argument_parser/detail/format_help_test.cpp    | 14 +++++++-------

test/api_stability/3.1.0/0010-API-BREAKGE-FASTA-ID-parsing.patch

@@ -1,7 +1,7 @@
-From 5238daf90a58f7335ee439daa474f624b57ac0d2 Mon Sep 17 00:00:00 2001
+From 50f7a76f13399faafd1c44e94ad01e5d34cc663d Mon Sep 17 00:00:00 2001
 From: Simon Gene Gottlieb <[email protected]>
 Date: Tue, 26 Oct 2021 10:37:46 +0200
-Subject: [PATCH 10/11] [API] [BREAKGE] FASTA ID parsing
+Subject: [PATCH 10/12] [API] [BREAKGE] FASTA ID parsing
 
 ---
  .../sequence_file_input_aminoacid.cpp         |  6 +-

test/api_stability/3.1.0/0011-API-FIX-single_pass_input-output_range.patch

@@ -1,7 +1,7 @@
-From fb4cb41dca810f4fe79c5fde912b91955323cabd Mon Sep 17 00:00:00 2001
+From d1a5e14f308426da79f4b9b9225604a839e81881 Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Mon, 13 Jun 2022 17:31:24 +0200
-Subject: [PATCH 11/11] [API] [FIX] single_pass_input output_range
+Subject: [PATCH 11/12] [API] [FIX] single_pass_input output_range
 
 ---
  test/unit/io/views/detail/take_exactly_view_test.cpp | 2 +-

test/api_stability/3.1.0/0012-NOAPI-DETAIL-Disable-warning-about-ABI.patch

@@ -0,0 +1,31 @@
+From a309f31b3c56bd480f90d05f1b6d06ea51a34eed Mon Sep 17 00:00:00 2001
+From: Enrico Seiler <[email protected]>
+Date: Mon, 20 Dec 2021 10:30:40 +0100
+Subject: [PATCH 12/12] [NOAPI] [DETAIL] Disable warning about ABI
+
+---
+ test/seqan3-test.cmake | 8 ++++++++
+ 1 file changed, 8 insertions(+)
+
+diff --git a/test/seqan3-test.cmake b/test/seqan3-test.cmake
+index 2c566cc80..6e4f1d31b 100644
+--- a/test/seqan3-test.cmake
++++ b/test/seqan3-test.cmake
+@@ -64,6 +64,14 @@ file(MAKE_DIRECTORY ${SEQAN3_TEST_CLONE_DIR}/googletest/include/)
+ # libraries which are in common for **all** seqan3 tests
+ add_library (seqan3_test INTERFACE)
+ target_compile_options (seqan3_test INTERFACE "-pedantic"  "-Wall" "-Wextra" "-Werror")
++
++# GCC12 and above: Disable warning about std::hardware_destructive_interference_size not being ABI-stable.
++if ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "GNU")
++    if (CMAKE_CXX_COMPILER_VERSION VERSION_GREATER_EQUAL 12)
++        target_compile_options (seqan3_test INTERFACE "-Wno-interference-size")
++    endif ()
++endif ()
++
+ target_link_libraries (seqan3_test INTERFACE "seqan3::seqan3" "pthread")
+ target_include_directories (seqan3_test INTERFACE "${SEQAN3_TEST_INCLUDE_DIR}")
+ add_library (seqan3::test ALIAS seqan3_test)
+-- 
+2.34.1
+