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198 Open 275 Closed
198 Open 275 Closed
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Issues list

Rename SpatialData elements
#906 opened Mar 18, 2025 by Fritze
tests: racoon dataset generation is flaky on arm mac
#900 opened Mar 17, 2025 by ap--
1
Restoring conda support
#899 opened Mar 15, 2025 by LucaMarconato
1 of 4 tasks
Can I speed up the spatialdata.polygon_query when dealing with really big datasets? method: query performance 🚀
#893 opened Feb 28, 2025 by kousaa
2
Docs: replace all links pointing latest docs to stable docs docs 📜 Documentation-related issues priority: high
#889 opened Feb 27, 2025 by LucaMarconato
Tutorial Technology Visium HD fails due to coordinate system
#888 opened Feb 27, 2025 by pcm32
1
Image2DModel.parse() forgetting about scale_factors if chunking
#886 opened Feb 25, 2025 by josenimo
1
Improve docs re data types for the Elements docs 📜 Documentation-related issues
#885 opened Feb 25, 2025 by LucaMarconato
1
Integration Testing CI Install Failure on python 3.10
#882 opened Feb 19, 2025 by scverse-bot
Spatialdata object from remote .zarr store merges multiple tables during reading remote ☁️
#880 opened Feb 14, 2025 by adkinsrs
Spatialdata object created from remote .zarr store does not preserve "path" property remote ☁️
#879 opened Feb 14, 2025 by adkinsrs
Reading remote .zarr store has issue with reading shapes.parquet file remote ☁️
#878 opened Feb 14, 2025 by adkinsrs
3
Mismatch between local and remote pre-commits
#875 opened Feb 11, 2025 by LucaMarconato
Improve substitute of rechunk('auto') after bounding_box.query
#872 opened Feb 11, 2025 by LucaMarconato
1
Quirks installing spatialdata with pixi
#870 opened Feb 11, 2025 by josenimo
4
Feature request, write_element does not materialize computation in in-memory SpatialData Object
#866 opened Feb 10, 2025 by ArneDefauw
7
Unrecognized zarr version for example dataset in tutorial
#863 opened Feb 4, 2025 by keviny2
7
Check for regular chunks before writing models
#862 opened Feb 4, 2025 by LucaMarconato
Tests fails with dask==2024.12.0 and dask==2024.12.1 dependencies 🐣 Cause of, and solution to, all of life's problems
#860 opened Feb 4, 2025 by LucaMarconato
read_zarr from s3
#859 opened Feb 4, 2025 by j-bac
1
Efficient whole slide imaging IO
#856 opened Jan 31, 2025 by Mr-Milk
1
Enable partial reading for specific subsets of elements I/O 💿
#855 opened Jan 30, 2025 by LucaMarconato
Shape mismatch in dataloader when rasterization is not used.
#854 opened Jan 30, 2025 by LucaMarconato
JoinTypes.__members__ empty in Python 3.13
#852 opened Jan 30, 2025 by LucaMarconato
2 of 5 tasks
Memory leak in bounding_box_query?
#850 opened Jan 29, 2025 by grst
1
ProTip! Updated in the last three days: updated:>2025-03-15.