Skip to content

Issues: scverse/spatialdata

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

202 Open 275 Closed
202 Open 275 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

module 'spatialdata' has no attribute 'match_sdata_to_table'
#912 opened Mar 25, 2025 by bellenger-l
1
cannot import spatialdata
#911 opened Mar 24, 2025 by bozhangstat
2
render_points with column coloring throws error when there are too many points
#910 opened Mar 21, 2025 by ziyuanzhao2000
New features of polygon queries enhancement ✨ New feature or request method: query
#908 opened Mar 18, 2025 by LucaMarconato
2 tasks
Rename SpatialData elements
#906 opened Mar 18, 2025 by Fritze
1
tests: racoon dataset generation is flaky on arm mac
#900 opened Mar 17, 2025 by ap--
1
Restoring conda support
#899 opened Mar 15, 2025 by LucaMarconato
1 of 4 tasks
Can I speed up the spatialdata.polygon_query when dealing with really big datasets? method: query performance 🚀
#893 opened Feb 28, 2025 by kousaa
2
Docs: replace all links pointing latest docs to stable docs docs 📜 Documentation-related issues priority: high
#889 opened Feb 27, 2025 by LucaMarconato
Tutorial Technology Visium HD fails due to coordinate system
#888 opened Feb 27, 2025 by pcm32
1
Image2DModel.parse() forgetting about scale_factors if chunking
#886 opened Feb 25, 2025 by josenimo
1
Improve docs re data types for the Elements docs 📜 Documentation-related issues
#885 opened Feb 25, 2025 by LucaMarconato
1
Integration Testing CI Install Failure on python 3.10
#882 opened Feb 19, 2025 by scverse-bot
Spatialdata object from remote .zarr store merges multiple tables during reading remote ☁️
#880 opened Feb 14, 2025 by adkinsrs
Spatialdata object created from remote .zarr store does not preserve "path" property remote ☁️
#879 opened Feb 14, 2025 by adkinsrs
Reading remote .zarr store has issue with reading shapes.parquet file remote ☁️
#878 opened Feb 14, 2025 by adkinsrs
3
Mismatch between local and remote pre-commits
#875 opened Feb 11, 2025 by LucaMarconato
Improve substitute of rechunk('auto') after bounding_box.query
#872 opened Feb 11, 2025 by LucaMarconato
1
Quirks installing spatialdata with pixi
#870 opened Feb 11, 2025 by josenimo
4
Feature request, write_element does not materialize computation in in-memory SpatialData Object
#866 opened Feb 10, 2025 by ArneDefauw
7
Unrecognized zarr version for example dataset in tutorial
#863 opened Feb 4, 2025 by keviny2
7
Check for regular chunks before writing models
#862 opened Feb 4, 2025 by LucaMarconato
Tests fails with dask==2024.12.0 and dask==2024.12.1 dependencies 🐣 Cause of, and solution to, all of life's problems
#860 opened Feb 4, 2025 by LucaMarconato
read_zarr from s3
#859 opened Feb 4, 2025 by j-bac
1
Efficient whole slide imaging IO
#856 opened Jan 31, 2025 by Mr-Milk
1
ProTip! Find all open issues with in progress development work with linked:pr.