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507 Open 1,268 Closed
507 Open 1,268 Closed
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Issues list

UMAP implementation in igraph Triage 🩺 This issue needs to be triaged by a maintainer
#3408 opened Dec 18, 2024 by iosonofabio
Allow both 'on data' legend together with legend on righ-hand side of plot Area - Plotting 🌺 Area – API API design
#3401 opened Dec 13, 2024 by mumichae
1
mask_obs parameter modifies obs column when calling scatterplot Area - Plotting 🌺
#3400 opened Dec 13, 2024 by mumichae
3 tasks done
1
cannot import name 'old_positionals' from 'scanpy._compat
#3390 opened Dec 2, 2024 by fbx233
2 of 3 tasks
1
"Interactive" Dotplot version: check for available var_names Area - Plotting 🌺
#3387 opened Nov 25, 2024 by FrancescaDr
1
Make _to_dense public?
#3386 opened Nov 25, 2024 by eroell
1
Difference between tl.rank_genes_groups and pl.rank_genes_groups_heatmap
#3378 opened Nov 20, 2024 by LioLenr
Rank genes groups wilcoxon test fails for more than 10 million cells good first issue easy first issue to get started in OSS community contribution!
#3377 opened Nov 19, 2024 by abs51295
3 tasks done
1.10.5
1
Nan values after running sc.tl.filter_rank_genes_groups and plotting
#3374 opened Nov 18, 2024 by shreyii
1
Switch to numpy.random.Generator Area – Reproducibility Exact replication
#3371 opened Nov 18, 2024 by flying-sheep
2 of 3 tasks
sc.pl.heatmap var_names function KeyError
#3363 opened Nov 13, 2024 by josenimo
3 tasks done
2
Fix “preprocessing” docs page Area - Documentation 📒
#3360 opened Nov 12, 2024 by flying-sheep
I started using scanny to read in data, but I always got the following error. I can't find any other detailed reasons.
#3355 opened Nov 12, 2024 by xzt199610
Dask docs Area - Documentation 📒 Area - Out of core 💾 Working with on disk data
#3346 opened Nov 8, 2024 by flying-sheep
@Intron7 @ilan-gold @mikelkou
1
Documentation typo for scanpy.pp.filter_cells
#3332 opened Oct 30, 2024 by fionaEyoung
ValueError: Output dtype not compatible with inputs. Needs info❔ More information needed
#3331 opened Oct 30, 2024 by ianfd
2 of 3 tasks
1
Feature Request: Option to Plot Highest Absolute Values on Top in sc.pl.umap Area - Plotting 🌺
#3326 opened Oct 25, 2024 by tobias-zehnder
scanpy.pl.stacked_violin - remove "marker label" whitespace if var_names is a list of genes Area - Plotting 🌺
#3320 opened Oct 24, 2024 by adkinsrs
3 tasks done
6
Multibatchnorm / between library batch normalization Area – Preprocessing 🧼
#3309 opened Oct 23, 2024 by Marwansha
2
negative values after score_genes with log1P or counts layer
#3297 opened Oct 20, 2024 by Li-ZhiD
Gearys C and Morans I As Public API
#3291 opened Oct 17, 2024 by ilan-gold
@Intron7
Plotting colors from obsm Area - Plotting 🌺
#3277 opened Oct 10, 2024 by canergen
1
ScanPy's BSD license and GPLed dependencies Question
#3272 opened Oct 1, 2024 by PertuyF
1
AttributeError: Can only use .str accessor with string values! Needs info❔ More information needed
#3261 opened Sep 26, 2024 by DUAN-GAO
2 of 3 tasks
3
Add scran nomalisation into scanpy Area – Preprocessing 🧼
#3255 opened Sep 23, 2024 by le-ander
2
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