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Merge pull request #13 from scipion-chem/ms_actions
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# Name of the GitHub Action | ||
name: Build plugin on Pull Request | ||
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# Specify when the Action should be triggered: when a pull request is opened against the 'devel' or 'master' branch | ||
on: | ||
pull_request: | ||
branches: [devel, master] | ||
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# Define the job that should be run | ||
jobs: | ||
build: | ||
# Specify the machine to run the job on | ||
runs-on: ubuntu-latest | ||
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# Define the steps to be taken in the job | ||
steps: | ||
# Installing scipion and miniconda dependencies | ||
- name: Install dependencies | ||
run: | | ||
sudo apt-get update | ||
sudo apt-get install -y wget gcc g++ libopenmpi-dev make | ||
# Installing Miniconda | ||
- name: Install Miniconda | ||
working-directory: ${{ github.workspace }}/../ | ||
run: | | ||
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh | ||
bash Miniconda3-latest-Linux-x86_64.sh -b -p miniconda/ | ||
source miniconda/etc/profile.d/conda.sh | ||
conda update -n base -c defaults conda -y | ||
# Installing Scipion | ||
- name: Install Scipion | ||
working-directory: ${{ github.workspace }}/../ | ||
run: | | ||
eval "$(miniconda/bin/conda shell.bash hook)" | ||
pip3 install --user scipion-installer | ||
python3 -m scipioninstaller -conda -noXmipp -noAsk scipion | ||
# Installing scipion-chem | ||
# Checkout to Pull Request branch if exists, by default stays in devel | ||
- name: Install scipion-chem (in branch ${{ github.head_ref }} if exists) | ||
working-directory: ${{ github.workspace }}/../ | ||
env: | ||
REPO_NAME: scipion-chem | ||
BRANCH_NAME: ${{ github.head_ref }} | ||
run: | | ||
git clone https://github.com/scipion-chem/$REPO_NAME.git | ||
if [ $(git ls-remote --heads https://github.com/scipion-chem/$REPO_NAME.git $BRANCH_NAME | wc -l) -eq 1 ]; then | ||
cd $REPO_NAME && git checkout $BRANCH_NAME | ||
fi | ||
scipion/scipion3 installp -p $REPO_NAME --devel | ||
# Installing scipion-chem-autodock | ||
# Checkout to Pull Request branch if exists, by default stays in devel | ||
- name: Install scipion-chem-autodock (in branch ${{ github.head_ref }} if exists) | ||
working-directory: ${{ github.workspace }}/../ | ||
env: | ||
REPO_NAME: scipion-chem-autodock | ||
BRANCH_NAME: ${{ github.head_ref }} | ||
run: | | ||
git clone https://github.com/scipion-chem/$REPO_NAME.git | ||
if [ $(git ls-remote --heads https://github.com/scipion-chem/$REPO_NAME.git $BRANCH_NAME | wc -l) -eq 1 ]; then | ||
cd $REPO_NAME && git checkout $BRANCH_NAME | ||
fi | ||
scipion/scipion3 installp -p $REPO_NAME --devel | ||
# Check out the repository in the pull request | ||
- name: Checkout repository | ||
uses: actions/checkout@v3 | ||
with: | ||
ref: ${{ github.head_ref }} | ||
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# Install plugin from the pull request using the Scipion3 installp command | ||
- name: Install plugin from pull request | ||
working-directory: ${{ github.workspace }} | ||
run: ../scipion/scipion3 installp -p . --devel |
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# General imports | ||
import subprocess, sys | ||
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def runTests(): | ||
""" | ||
This function runs the runTests.py script inside package pwchem. | ||
Note: To run this script, the scipion3 env must be active. | ||
""" | ||
# Define the command to run the script | ||
command = ["python", "-m", "pwchem.runTests"] + sys.argv[1:] | ||
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# Run the script as a separate process | ||
try: | ||
subprocess.run(command, check=True) | ||
except subprocess.CalledProcessError: | ||
sys.exit(1) | ||
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# Call to main execution | ||
if __name__ == "__main__": | ||
runTests() |
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{ | ||
"datasets": ["model_building_tutorial", "smallMolecules"], | ||
"skippable": { | ||
"gpu": [ | ||
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], | ||
"dependencies": [ | ||
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], | ||
"others": [ | ||
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] | ||
} | ||
} |