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Sherbrooke Connectivity Imaging Lab

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI.
README.md

Sherbrooke Connectivity Imaging Laboratory

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI acquisition, reconstruction, tractography, processing and visualization. The aim of the SCIL is to better understand structural connectivity, develop novel tractography algorithms, validate them and use them for human brain mapping and connectomics applications.

Useful links:

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  1. scilpy scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    Python 73 66

  2. tractoflow tractoflow Public

    TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity

    Nextflow 59 25

  3. scil-documentation scil-documentation Public

    Documentation for the SCIL

    Python 4 17

Repositories

Showing 10 of 61 repositories
  • scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    scilus/scilpy’s past year of commit activity
    Python 73 66 40 12 Updated Aug 1, 2025
  • quactography Public
    scilus/quactography’s past year of commit activity
    Python 1 Apache-2.0 7 0 3 Updated Jul 30, 2025
  • containers-scilus Public

    Files needed to build a container to run all scilus flows.

    scilus/containers-scilus’s past year of commit activity
    Dockerfile 3 5 5 1 Updated Jul 29, 2025
  • scil-documentation Public

    Documentation for the SCIL

    scilus/scil-documentation’s past year of commit activity
    Python 4 17 12 5 Updated Jul 28, 2025
  • nf-pediatric Public

    nf-pediatric is an end-to-end connectomics pipeline for pediatric (0-18y) dMRI and sMRI brain scans.

    scilus/nf-pediatric’s past year of commit activity
    Nextflow 4 MIT 1 2 2 Updated Jul 25, 2025
  • nf-neuro-tutorial Public
    scilus/nf-neuro-tutorial’s past year of commit activity
    Nextflow 0 6 0 1 Updated Jul 18, 2025
  • nf-neuro Public

    nf-neuro is a nextflow neuroimaging library maintained by the SCIL team

    scilus/nf-neuro’s past year of commit activity
    Nextflow 11 GPL-3.0 17 20 13 Updated Jul 18, 2025
  • tractometry_flow Public
    scilus/tractometry_flow’s past year of commit activity
    Nextflow 0 12 0 0 Updated Jul 16, 2025
  • scilpy-bot Public

    Exploration of contextual approach for LLM and scilpy scripts

    scilus/scilpy-bot’s past year of commit activity
    0 0 0 0 Updated Jul 16, 2025
  • nf-neuro-documentation Public
    scilus/nf-neuro-documentation’s past year of commit activity
    MDX 1 6 5 3 Updated Jul 15, 2025
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