rust-samtools-extractor

• rust samtools extractor.
• give the id list and extracts all the reads corresponding to those ids and writes a fasta.
• please see the last commit message and if it says compiled binary then it is completed or else still in development version.

cargo build 

λ gauravsablok rust-samtools-extractor → λ git main* → ./target/debug/rust-samtools-extractor -h
Usage: rust-samtools-extractor <ALIGNMENT_ARG> <IDLIST_ARG>

Arguments:
  <ALIGNMENT_ARG>  please provide the path to the alignment file
  <IDLIST_ARG>     please provide the id list for the specific region

Options:
  -h, --help     Print help
  -V, --version  Print version

• how to run the binary

./target/debug/rust-samtools-extractor ./sample-files/Col0_C1.100k.sam ./sample-files/sample.txt

Gaurav Sablok