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[package] | ||
name = "rust-pangenome-graph-summarize" | ||
version = "0.1.0" | ||
edition = "2021" | ||
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[dependencies] | ||
clap = { version = "4.5.26", features = ["derive"] } |
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# rust-pangenome-graph-analyze | ||
rust pangenome graph analyze | ||
# rust-pangenome-graph-summarize | ||
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- rust pangenome graph summarize. | ||
- it writes the pangenome graph fasta also. | ||
- Incase of Golang and RUST, please see the last commit message and if it says compiled binary then it is completed or else still in development version. | ||
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``` | ||
cargo build | ||
``` | ||
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``` | ||
╭─gauravsablok@fedora ~/Desktop/rust-pangenome-graph-summarize ‹main*› | ||
╰─➤ ./target/debug/rust-pangenome-graph-summarize -h | ||
Usage: rust-pangenome-graph-summarize <GRAPH> | ||
Arguments: | ||
<GRAPH> please provide the path to the graph file | ||
Options: | ||
-h, --help Print help | ||
-V, --version Print version | ||
``` | ||
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``` | ||
╭─gauravsablok@fedora ~/Desktop/rust-pangenome-graph-summarize ‹main*› | ||
╰─➤ ./rust-pangenome-graph-summarize ./sample-file/sample-pangenome.gfa | ||
Results have been written: | ||
number_segment:8 | ||
number_links:11 | ||
number_arc:22 | ||
number_rank:2 | ||
total_segment_length:17572 | ||
average_segment_length:2196 | ||
sum_0_segment_length:16569 | ||
``` | ||
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Gaurav Sablok |
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