fix broken doc links

scalableminds · Oct 16, 2024 · 12553f2 · 12553f2
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diff --git a/docs/src/webknossos-py/examples/apply_merger_mode.md b/docs/src/webknossos-py/examples/apply_merger_mode.md
@@ -4,7 +4,7 @@ This example applies a merger mode annotation to a segmentation.
 
 It downloads a [sample dataset](https://webknossos.org/datasets/scalable_minds/l4_sample_dev/view) with a [sample annotation](https://webknossos.org/annotations/Explorational/6204d2cd010000db0003db91).
 The annotation has been created with "merger mode", where skeleton trees are used to merge segments.
-Read more about the [merger mode in the WEBKNOSSOS documentation](/webknossos/volume_annotation.html#proof-reading-and-merging-segments).
+Read more about the [merger mode in the WEBKNOSSOS documentation](/webknossos/proofreading/merger_mode.html).
 The example then uses the [Dataset API](dataset_usage.md) and [fastremap module](https://github.com/seung-lab/fastremap) for reading, remapping and rewriting the `segmentation` layer.
 
 _This example additionally needs the fastremap package._

diff --git a/docs/src/webknossos-py/examples/load_annotation_from_file.md b/docs/src/webknossos-py/examples/load_annotation_from_file.md
@@ -1,6 +1,6 @@
 # Annotation File to OME-TIFF
 
-This example shows how to turn a volume annotation downloaded from WEBKNOSSOS into a OME-TIFF. When [manually downloading a WEBKNOSSOS annotation](/webknossos/export.html#data-export-through-the-ui) through the UI you end up with a ZIP file containing the volume segmentation in the WKW-format (and potentially any skeleton annotation).
+This example shows how to turn a volume annotation downloaded from WEBKNOSSOS into a OME-TIFF. When [manually downloading a WEBKNOSSOS annotation](/webknossos/data/export_ui.html) through the UI you end up with a ZIP file containing the volume segmentation in the WKW-format (and potentially any skeleton annotation).
 
 As an alternative to manually downloading annotation files, have a look at streaming the data directly from the remote serve, e.g., in [this example](./download_segments.md).
 

diff --git a/docs/src/webknossos-py/examples/merge_nmls.md b/docs/src/webknossos-py/examples/merge_nmls.md
@@ -1,6 +1,7 @@
 # Merge Trees of two NML files
 
-This example opens two [NML files](/webknossos/data_formats.md#nml-files) and copies the trees from the NML A to B and saves the output to a new NML (that includes the trees of both input NMLs).
+This example opens two [NML files](/webknossos/data/concepts.md#nml-files) and copies the trees from the NML A to B and saves the output to a new NML (that includes the trees of both input NMLs).
+This example opens two [NML files](/webknossos/data/concepts.md#nml-files) and copies the trees from the NML A to B and saves the output to a new NML (that includes the trees of both input NMLs).
 
 ```python
 --8<--

diff --git a/webknossos/webknossos/annotation/annotation.py b/webknossos/webknossos/annotation/annotation.py
@@ -1,7 +1,7 @@
 """Annotations can contain annotated data in two forms:
 
-  - [skeleton data](/webknossos/skeleton_annotation.html), as provided by the `Skeleton` class, and
-  - [volume annotation layers](/webknossos/volume_annotation.html) (or volume layers short),
+  - [skeleton data](/webknossos/skeleton_annotation/index.html), as provided by the `Skeleton` class, and
+  - [volume annotation layers](/webknossos/volume_annotation/index.html) (or volume layers short),
     which can be exported as a `SegmentationLayer`, see `export_volume_layer_to_dataset()`
     and `temporary_volume_layer_copy()`.