Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Dynesty #327

Merged
merged 68 commits into from
Apr 11, 2024
Merged

Dynesty #327

merged 68 commits into from
Apr 11, 2024

Commits on Nov 3, 2022

  1. Nested Sampling implementation and testing

    @thea-mckenna
    thea-mckenna committed Nov 3, 2022
    Configuration menu
    Copy the full SHA
    124af8d View commit details
    Browse the repository at this point in the history

Commits on Nov 4, 2022

  1. add dynesty to requirements

    @sblunt
    sblunt committed Nov 4, 2022
    Configuration menu
    Copy the full SHA
    74bd36f View commit details
    Browse the repository at this point in the history

Commits on Nov 17, 2022

  1. test files

    @thea-mckenna
    thea-mckenna committed Nov 17, 2022
    Configuration menu
    Copy the full SHA
    eab057a View commit details
    Browse the repository at this point in the history

  2. fixed gaussian and uniform priors draw_samples()

    @thea-mckenna
    thea-mckenna committed Nov 17, 2022
    Configuration menu
    Copy the full SHA
    53d9e51 View commit details
    Browse the repository at this point in the history

Commits on Nov 21, 2022

  1. fixed SinPrior draw_samples()

    @thea-mckenna
    thea-mckenna committed Nov 21, 2022
    Configuration menu
    Copy the full SHA
    47ec88a View commit details
    Browse the repository at this point in the history

Commits on Dec 2, 2022

  1. run_sampler tweaks

    @thea-mckenna
    thea-mckenna committed Dec 2, 2022
    Configuration menu
    Copy the full SHA
    1393d09 View commit details
    Browse the repository at this point in the history

Commits on Feb 1, 2023

  1. new tests

    @thea-mckenna
    thea-mckenna committed Feb 1, 2023
    Configuration menu
    Copy the full SHA
    107dd2c View commit details
    Browse the repository at this point in the history

Commits on Feb 17, 2023

  1. fake data changes

    @thea-mckenna
    thea-mckenna committed Feb 17, 2023
    Configuration menu
    Copy the full SHA
    40240db View commit details
    Browse the repository at this point in the history

  2. fixed Dynesty branch comments

    @thea-mckenna
    thea-mckenna committed Feb 17, 2023
    Configuration menu
    Copy the full SHA
    f518535 View commit details
    Browse the repository at this point in the history

Commits on Mar 10, 2023

  1. nested sampler testing

    @thea-mckenna
    thea-mckenna committed Mar 10, 2023
    Configuration menu
    Copy the full SHA
    88a23ae View commit details
    Browse the repository at this point in the history

Commits on Mar 30, 2023

  1. new tests

    @thea-mckenna
    thea-mckenna committed Mar 30, 2023
    Configuration menu
    Copy the full SHA
    d85d099 View commit details
    Browse the repository at this point in the history

  2. fixed pfrac for static sampler

    @thea-mckenna
    thea-mckenna committed Mar 30, 2023
    Configuration menu
    Copy the full SHA
    38ca2f1 View commit details
    Browse the repository at this point in the history

Commits on Apr 13, 2023

  1. reseearch note function

    @thea-mckenna
    thea-mckenna committed Apr 13, 2023
    Configuration menu
    Copy the full SHA
    c1b1a45 View commit details
    Browse the repository at this point in the history

  2. updates to research note function

    @thea-mckenna
    thea-mckenna committed Apr 13, 2023
    Configuration menu
    Copy the full SHA
    26007c3 View commit details
    Browse the repository at this point in the history

Commits on Apr 20, 2023

  1. replaced issubclass in ptform

    @thea-mckenna
    thea-mckenna committed Apr 20, 2023
    Configuration menu
    Copy the full SHA
    9b13c47 View commit details
    Browse the repository at this point in the history

  2. edits

    @thea-mckenna
    thea-mckenna committed Apr 20, 2023
    Configuration menu
    Copy the full SHA
    6e964d5 View commit details
    Browse the repository at this point in the history

Commits on May 5, 2023

  1. parallellization!

    @thea-mckenna
    thea-mckenna committed May 5, 2023
    Configuration menu
    Copy the full SHA
    e9c750c View commit details
    Browse the repository at this point in the history

Commits on May 14, 2023

  1. num_threads in run_sampler

    @thea-mckenna
    thea-mckenna committed May 14, 2023
    Configuration menu
    Copy the full SHA
    6e8eb85 View commit details
    Browse the repository at this point in the history

Commits on Jun 12, 2023

  1. nested sampler "kill" switch

    @thea-mckenna
    thea-mckenna committed Jun 12, 2023
    Configuration menu
    Copy the full SHA
    7dc691f View commit details
    Browse the repository at this point in the history

  2. edited "kill" switch attribute

    @thea-mckenna
    thea-mckenna committed Jun 12, 2023
    Configuration menu
    Copy the full SHA
    597778c View commit details
    Browse the repository at this point in the history

Commits on Jun 29, 2023

  1. Merge branch 'main' into dynesty

    @sblunt
    sblunt committed Jun 29, 2023
    Configuration menu
    Copy the full SHA
    900e07b View commit details
    Browse the repository at this point in the history

Commits on Jul 5, 2023

  1. moved files to personal computer, fixed uncertainty to 2 milliarcseconds

    @thea-mckenna
    thea-mckenna committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    7ab3615 View commit details
    Browse the repository at this point in the history

  2. delete icloud files

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    61f54f7 View commit details
    Browse the repository at this point in the history

  3. Delete .DS_Store

    @sblunt
    sblunt authored Jul 5, 2023
    Configuration menu
    Copy the full SHA
    101d425 View commit details
    Browse the repository at this point in the history

  4. Delete .DS_Store

    @sblunt
    sblunt authored Jul 5, 2023
    Configuration menu
    Copy the full SHA
    149c965 View commit details
    Browse the repository at this point in the history

  5. Delete .DS_Store

    @sblunt
    sblunt authored Jul 5, 2023
    Configuration menu
    Copy the full SHA
    f7901be View commit details
    Browse the repository at this point in the history

  6. Delete .DS_Store

    @sblunt
    sblunt authored Jul 5, 2023
    Configuration menu
    Copy the full SHA
    eb80e2f View commit details
    Browse the repository at this point in the history

  7. add ds_store files to gitignore

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    fb3d53a View commit details
    Browse the repository at this point in the history

  8. Merge branch 'dynesty' of https://github.com/sblunt/orbitize into dyn… 

    …esty
    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    df63e4d View commit details
    Browse the repository at this point in the history

  9. Merge branch 'main' into dynesty

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    ebba94c View commit details
    Browse the repository at this point in the history

  10. renamed MCMC tutorial

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    e220f0e View commit details
    Browse the repository at this point in the history

  11. revert deletion of other tutorials

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    4b28943 View commit details
    Browse the repository at this point in the history

  12. add todo list

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    3a6e7bf View commit details
    Browse the repository at this point in the history

  13. pep8

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    a88a7da View commit details
    Browse the repository at this point in the history

  14. kepler's 3rd law bugfix

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    bdf1bf0 View commit details
    Browse the repository at this point in the history

  15. change savdir of nested_test

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    c0cc7b8 View commit details
    Browse the repository at this point in the history

  16. fix parallelization & update docs a bit

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    3037cd9 View commit details
    Browse the repository at this point in the history

  17. bit of cleanup for e2e tests

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    b528ab3 View commit details
    Browse the repository at this point in the history

  18. delete researchnote_func

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    30b74cf View commit details
    Browse the repository at this point in the history

  19. go back to optimized dynesty parallelization method

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    299a8fd View commit details
    Browse the repository at this point in the history

  20. clean up generate synethetic data documentation

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    cc5af7a View commit details
    Browse the repository at this point in the history

  21. clean up unit test a bit; test both dynamic & static samplers

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    eccdf48 View commit details
    Browse the repository at this point in the history

  22. tweaks here and there

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    5faf0e8 View commit details
    Browse the repository at this point in the history

  23. don't use mp unless n_threads>1

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    87cbcb8 View commit details
    Browse the repository at this point in the history

  24. getting unit tests to pass

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    76a7e0d View commit details
    Browse the repository at this point in the history

  25. set default values for generate synthetic data func

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    e6879b3 View commit details
    Browse the repository at this point in the history

  26. parallelization in tests

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    65b976e View commit details
    Browse the repository at this point in the history

  27. remove kill switch

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    589b51e View commit details
    Browse the repository at this point in the history

  28. remove unused var

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    cb1efd2 View commit details
    Browse the repository at this point in the history

  29. bugfix

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    350c043 View commit details
    Browse the repository at this point in the history

  30. actually fixing the bug

    @sblunt
    sblunt committed Jul 5, 2023
    Configuration menu
    Copy the full SHA
    49e7bab View commit details
    Browse the repository at this point in the history

Commits on Jul 6, 2023

  1. remember when I said I fixed the bug well guess what

    @sblunt
    sblunt committed Jul 6, 2023
    Configuration menu
    Copy the full SHA
    fa8b4a1 View commit details
    Browse the repository at this point in the history

Commits on Jul 7, 2023

  1. bugfix for loguniform transform_samples; pep8 cleanup

    @sblunt
    sblunt committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    4d2e0da View commit details
    Browse the repository at this point in the history

  2. fixed no_negatives keyword in GaussianPrior

    @sblunt
    sblunt committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    736725e View commit details
    Browse the repository at this point in the history

Commits on Jul 20, 2023

  1. nested sampler tutorial!

    @thea-mckenna
    thea-mckenna committed Jul 20, 2023
    Configuration menu
    Copy the full SHA
    fd6abdb View commit details
    Browse the repository at this point in the history

Commits on Nov 18, 2023

  1. don't bootstrap by default

    @sblunt
    sblunt committed Nov 18, 2023
    Configuration menu
    Copy the full SHA
    a70f04e View commit details
    Browse the repository at this point in the history

Commits on Jan 12, 2024

  1. Merge branch 'v3' into dynesty

    @sblunt
    sblunt committed Jan 12, 2024
    Configuration menu
    Copy the full SHA
    59c02a6 View commit details
    Browse the repository at this point in the history

Commits on Feb 29, 2024

  1. in progress updates

    @sblunt
    sblunt committed Feb 29, 2024
    Configuration menu
    Copy the full SHA
    dd5468f View commit details
    Browse the repository at this point in the history

Commits on Mar 15, 2024

  1. complete tutorial

    @sblunt
    sblunt committed Mar 15, 2024
    Configuration menu
    Copy the full SHA
    d7108ed View commit details
    Browse the repository at this point in the history

  2. make dynesty sampler an attribute of NestedSampler

    @sblunt
    sblunt committed Mar 15, 2024
    Configuration menu
    Copy the full SHA
    46a2c6d View commit details
    Browse the repository at this point in the history

  3. restrict angle range in nested e2e test

    @sblunt
    sblunt committed Mar 15, 2024
    Configuration menu
    Copy the full SHA
    271dafe View commit details
    Browse the repository at this point in the history

  4. Merge branch 'v3' into dynesty

    @sblunt
    sblunt authored Mar 15, 2024
    Configuration menu
    Copy the full SHA
    758a27a View commit details
    Browse the repository at this point in the history

  5. time nested e2e test

    @sblunt
    sblunt committed Mar 15, 2024
    Configuration menu
    Copy the full SHA
    dad850e View commit details
    Browse the repository at this point in the history

  6. Merge branch 'dynesty' of https://github.com/sblunt/orbitize into dyn… 

    …esty
    @sblunt
    sblunt committed Mar 15, 2024
    Configuration menu
    Copy the full SHA
    75b7507 View commit details
    Browse the repository at this point in the history

Commits on Mar 17, 2024

  1. lint

    @sblunt
    sblunt committed Mar 17, 2024
    Configuration menu
    Copy the full SHA
    20bf7a9 View commit details
    Browse the repository at this point in the history

  2. fix loguniform prior bug

    @sblunt
    sblunt committed Mar 17, 2024
    Configuration menu
    Copy the full SHA
    4dd3c2d View commit details
    Browse the repository at this point in the history

  3. protect e2e nested sampler entry point

    @sblunt
    sblunt committed Mar 17, 2024
    Configuration menu
    Copy the full SHA
    3786cda View commit details
    Browse the repository at this point in the history

  4. add keyword for passing kwargs into run_nested()

    @sblunt
    sblunt committed Mar 17, 2024
    Configuration menu
    Copy the full SHA
    cc3a076 View commit details
    Browse the repository at this point in the history