Merge branch 'hcga' into fit-arbitrary-abs-astrom

.github/workflows/python-package.yml

@@ -17,7 +17,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.8", "3.9", "3.10"]
+        python-version: ["3.10", "3.11", "3.12"]
 
     steps:
     - uses: actions/checkout@v3
@@ -40,5 +40,9 @@ jobs:
       run: |
         pytest --cov
     - name: Coveralls GitHub Action
+      if: ${{ matrix.python-version }} == '3.12'
       uses: coverallsapp/github-action@v2
-
+      with:
+        parallel: true
+        flag-name: run-$
+

.github/workflows/run-notebooks.yml

@@ -0,0 +1,36 @@
+name: Test jupyter notebook tutorials
+
+on:
+  push:
+    branches: 
+      - main # only rerun tutorials when making PRs or changing main
+      - v3
+  pull_request:
+    branches: 
+      - '*'
+
+jobs:
+  build:
+
+    runs-on: macos-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.12"]
+
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v3
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        python -m pip install jupyter setuptools wheel nbmake
+        python -m pip install -r requirements.txt
+        python -m pip install . --no-build-isolation
+    - name: Run tutorial notebooks
+      run: |
+        py.test --nbmake --nbmake-timeout=3000 docs/tutorials/*.ipynb
+      

docs/conf.py

@@ -51,8 +51,8 @@
 # Disable notebook timeout
 nbsphinx_timeout = -1
 
-# Always re-run notebooks when building docss
-nbsphinx_execute = "always"
+# Only re-run notebooks that have no outputs
+nbsphinx_execute = "auto"
 
 # Allow notebook errors
 nbsphinx_allow_errors = False

docs/index.rst

@@ -54,6 +54,12 @@ User Guide:
 Changelog:
 ++++++++++
 
+**3.0.0 (TBD)**
+
+- discuss MCMC autocorrelation in MCMC tutorial (@michaelkmpoon)
+- add time warning if OFTI doesn't accept an orbit in first 60 s (@michaelkmpoon)
+- implementation of Hipparcos-Gaia catalog of accelerations fitting! (@semaphoreP)
+
 **2.2.2 (2023-06-30)**
 
 - tests now overwrite any generated text files (@sblunt)

docs/requirements.txt

@@ -1,3 +1,4 @@
 nbsphinx
 pandoc
-ipykernel
+ipykernel
+sphinx_rtd_theme

docs/tutorials.rst

@@ -55,6 +55,7 @@ us if you are still confused).
    tutorials/Using_nonOrbitize_Posteriors_as_Priors.ipynb
    tutorials/Changing_bases_tutorial.ipynb
    tutorials/Hipparcos_IAD.ipynb
+   tutorials/HGCA_tutorial.ipynb
 
 
 

orbitize/example_data/gaia_edr3_betpic_epochs.csv

@@ -0,0 +1,45 @@
+Target, ra[rad], dec[rad], ra[h:m:s], dec[d:m:s], ObservationTimeAtGaia[UTC], CcdRow[1-7], zetaFieldAngle[rad], scanAngle[rad], Fov[FovP=preceding/FovF=following], parallaxFactorAlongScan, parallaxFactorAcrossScan, ObservationTimeAtBarycentre[BarycentricJulianDateInTCB]
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