Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

homolog.table as reference in RunAzimuth #218

Open
wants to merge 1 commit into
base: master
Choose a base branch
from

Conversation

KalinNonchev
Copy link

Hello,

RunAzimuth currently uses a hardcoded reference of the homolog.table in ConvertGeneNames which relies on an internet link and assumes an internet connection is available.

homolog.table = 'https://seurat.nygenome.org/azimuth/references/homologs.rds'

Allowing to specify the location of the homolog.table in RunAzimuth would allow an offline execution of the function and improve flexibility.

Please let me know your opinion. Thank you in advance!

Best,

@KalinNonchev
Copy link
Author

@rsatija @saketkc @andrewwbutler @keller-mark could you look into this when you have time? Thank you

@KalinNonchev
Copy link
Author

@Gesmira could you look into this as well? I think it should work. Thank you

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant