[UNDER CONSTRUCTION]

Information on running microfinder to aid bird genome curation here: https://zenodo.org/records/13913870.

Installation

git clone https://github.com/Aquatic-Symbiosis-Genomics-Project/MicroFinder.git

# Install dependencies with
bundler install

Usage:

MicroFinder.sh input_fasta max_scaffold_cutoff

or with singularity:

singularity run -B `pwd`:/data docker://ghcr.io/aquatic-symbiosis-genomics-project/microfinder:latest /data/bLarArg3.1.HAP1.primary.curated.fa 1000000

or docker:

docker run -v `pwd`:/data ghcr.io/aquatic-symbiosis-genomics-project/microfinder:latest /data/bLarArg3.1.HAP1.primary.curated.fa 1000000