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Influenza segments missing #97

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migrau opened this issue Nov 28, 2019 · 0 comments
Open

Influenza segments missing #97

migrau opened this issue Nov 28, 2019 · 0 comments

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@migrau
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migrau commented Nov 28, 2019

Hi,
For most cases, IVA works great for flu samples but sometimes, if the depth is not very high (<50x), a segment (usually PB2) is completely missing in the contigs results. I have been playing with --seed_ext_min_cov 1 --seed_min_kmer_cov 10 and seems to work. Anyway, is it a good idea to set the --seed_ext_min_cov 1?
Thanks
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