Skip to content
@sanger-pathogens

Pathogen Informatics, Wellcome Sanger Institute

Popular repositories Loading

  1. Roary Roary Public

    Rapid large-scale prokaryote pan genome analysis

    Perl 301 189

  2. snp-sites snp-sites Public

    Finds SNP sites from a multi-FASTA alignment file

    C 230 50

  3. Artemis Artemis Public

    Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

    Java 229 75

  4. circlator circlator Public

    A tool to circularize genome assemblies

    Python 220 56

  5. ariba ariba Public

    Antimicrobial Resistance Identification By Assembly

    Python 165 52

  6. assembly-stats assembly-stats Public

    Get assembly statistics from FASTA and FASTQ files

    C++ 108 22

Repositories

Showing 10 of 86 repositories
  • TpRNAseq Public

    A bacterial RNAseq pipeline, designed for analysis of Treponema pallidum data

    sanger-pathogens/TpRNAseq’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Jun 27, 2024
  • long-read-ampliseq Public
    sanger-pathogens/long-read-ampliseq’s past year of commit activity
    Nextflow 1 AGPL-3.0 0 0 0 Updated Jun 27, 2024
  • assorted-sub-workflows Public
    sanger-pathogens/assorted-sub-workflows’s past year of commit activity
    Nextflow 0 AGPL-3.0 0 0 0 Updated Jun 27, 2024
  • Artemis Public

    Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

    sanger-pathogens/Artemis’s past year of commit activity
    Java 229 75 28 4 Updated Jun 15, 2024
  • nextflow-commons Public

    Store of generic templates and scripts for nextflow pipelines

    sanger-pathogens/nextflow-commons’s past year of commit activity
    Nextflow 1 AGPL-3.0 0 0 2 Updated Jun 12, 2024
  • nextflowtool Public
    sanger-pathogens/nextflowtool’s past year of commit activity
    Groovy 0 AGPL-3.0 0 0 0 Updated Jun 11, 2024
  • bentley-app Public

    Static site for Stephen Bentley's group

    sanger-pathogens/bentley-app’s past year of commit activity
    JavaScript 0 0 0 1 Updated May 2, 2024
  • circlator Public

    A tool to circularize genome assemblies

    sanger-pathogens/circlator’s past year of commit activity
    Python 220 56 53 4 Updated Apr 6, 2024
  • python_fun Public
    sanger-pathogens/python_fun’s past year of commit activity
    Python 1 1 0 0 Updated Mar 13, 2024
  • bactgen-training-app Public

    Static site for training on the Juno/GPS2 projects

    sanger-pathogens/bactgen-training-app’s past year of commit activity
    HTML 0 1 0 0 Updated Feb 29, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…