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test run_gage fails #90

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rentiandong opened this issue Apr 15, 2019 · 0 comments
Open

test run_gage fails #90

rentiandong opened this issue Apr 15, 2019 · 0 comments

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@rentiandong
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When I do "python setup.py test", the "run_gage" test fails with the following message:

Traceback (most recent call last):
File "/Users/myname/iva/iva/tests/qc_external_test.py", line 36, in test_run_gage
self.assertEqual(got_lines[1:], expected_lines[1:])
AssertionError: Lists differ: ['Con[223 chars]n', 'Chaff bases: 0\n', 'Duplicated Reference [529 chars]0\n'] != ['Con[223 chars]n', 'Genome Size: 3000\n', 'Assembly Size: 299[870 chars]s\n']

I am running tests from a University Owned CentOS 7.4, where I do not have root privilege. I tried running tests using python 2 and 3, and both gave me this error. I tried proceeding with installation anyway, and the iva executable seems to be working just fine.

Attached is the temporary folder created for the test. I am not sure what other information I should provide at this point, please let me know and I will provide them. Thanks for your help.
tmp.qc_external_test_run_gage.zip

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