DPL-1003 sample prep create an RNA stock plate from extraction lims

lib/actions/racking.rb

@@ -20,7 +20,7 @@ def html_error_message(error_messages)
 module Actions
   module Racking # rubocop:todo Style/Documentation
     DNA_STOCK_PLATE_PURPOSE = 'DNA Stock Plate'
-    RNA_STOCK_PLATE_PURPOSE = 'RNA Stock Plate'
+    RNA_STOCK_PLATE_PURPOSE = 'Stock RNA Plate'
     STOCK_PLATE_PURPOSE = 'Stock Plate'
     DNA_ALIQUOT = 'DNA'
     RNA_ALIQUOT = 'RNA'

script/container_inferences.rb

@@ -15,7 +15,7 @@ def containers
 
   def purpose_for_aliquot(aliquot)
     return 'DNA Stock Plate' if aliquot == 'DNA'
-    return 'RNA Stock Plate' if aliquot == 'RNA'
+    return 'Stock RNA Plate' if aliquot == 'RNA'
 
     return 'Stock Plate'
   end

script/purpose_name_inference.rb

@@ -19,7 +19,7 @@ def _CODE
         ?asset :contains ?anotherAsset .
         ?anotherAsset :aliquotType """RNA""" .
       }=>{
-        :step :addFacts { ?asset :purpose """RNA Stock Plate""" } .
+        :step :addFacts { ?asset :purpose """Stock RNA Plate""" } .
       } .
 
       @forAll :anotherAsset, :someAliquot .
@@ -53,7 +53,7 @@ def containers
 
   def purpose_for_aliquot(aliquot)
     return 'DNA Stock Plate' if aliquot == 'DNA'
-    return 'RNA Stock Plate' if aliquot == 'RNA'
+    return 'Stock RNA Plate' if aliquot == 'RNA'
 
     return 'Stock Plate'
   end

script/runners/transfer_tubes_to_tube_rack_by_position.rb

@@ -140,7 +140,7 @@ def process
           if (aliquot_types.uniq.length == 1) && (aliquot_types.uniq.first == 'DNA')
             purpose_name = 'DNA Stock Plate'
           elsif (aliquot_types.uniq.length == 1) && (aliquot_types.uniq.first == 'RNA')
-            purpose_name = 'RNA Stock Plate'
+            purpose_name = 'Stock RNA Plate'
           else
             purpose_name = 'Stock Plate'
           end

spec/integration/inferences_data.rb

@@ -27,7 +27,7 @@ def inferences_data
           ?y :t ?_val .
         } => {
           :step :addFacts {?x :val ?_val }.
-        }
+        }.
 
     ',
       inputs:
@@ -58,7 +58,7 @@ def inferences_data
           ?y :t ?_pos .
         } => {
           :step :addFacts {?x :relates_with ?y }.
-        }
+        }.
     ',
       inputs:
         '
@@ -95,7 +95,7 @@ def inferences_data
           ?y :a "TubeB" .
         } => {
           :step :addFacts { ?y :transferredFrom ?x . }.
-        }
+        }.
     ',
       inputs:
         '
@@ -284,7 +284,7 @@ def inferences_data
       } => {
         :step :addFacts {?rack :is "TubeRack" .} .
         :step :addFacts {?rack :location ?_position .} .
-      }
+      }.
     ',
       inputs:
         '

spec/lib/actions/racking_spec.rb

@@ -169,8 +169,8 @@ def add_empty_slots(content, num_empty, start_pos = 0)
     context 'when an RNA tube' do
       let(:aliquot_type) { 'RNA' }
 
-      it 'generates the RNA stock plate purpose' do
-        expect(updates.to_h[:add_facts].find { |triple| triple[1] == 'purpose' }[2]).to eq('RNA Stock Plate')
+      it 'generates the stock RNA plate purpose' do
+        expect(updates.to_h[:add_facts].find { |triple| triple[1] == 'purpose' }[2]).to eq('Stock RNA Plate')
       end
     end
   end

spec/script/runners/transfer_tubes_to_tube_rack_by_position_spec.rb

@@ -100,12 +100,12 @@
           end
           context 'when it is RNA' do
             let(:aliquot) { aliquot_rna }
-            it 'will set up an RNA Stock plate purpose' do
+            it 'will set up a Stock RNA plate purpose' do
               added_facts = instance.process.to_h[:add_facts]
               purposes = added_facts.select { |triple| triple[1] == 'purpose' }
               expect(purposes.size).to eq(1)
               expect(purposes.first[0]).to eq(rack.uuid)
-              expect(purposes.first[2]).to eq('RNA Stock Plate')
+              expect(purposes.first[2]).to eq('Stock RNA Plate')
             end
           end