tag v0.2.1 (#13)

CHANGELOG.md

@@ -1,10 +1,10 @@
 # Changelog
 
-## [v0.2.1]
+## [v0.2.1] - 2023-06-01
 
+- Support for csv files input and output
 - Documentation now available at https://dpr.readthedocs.io
 
-
 ## [v0.2] - 2020-07-16
 
 - Fix bug due to interpolation in ```dpr.utils.draw_fancy_graph```

MANIFEST.in

@@ -1,5 +1,4 @@
 include LICENSE
-include README.md
 include CHANGELOG.md
 include example.ipynb
 include datasets/*

docs/conf.py

@@ -19,11 +19,12 @@
 # -- Project information -----------------------------------------------------
 
 project = 'Diffusion Profile Realignment'
-copyright = '2020, Samuel St-Jean'
+copyright = '2023, Samuel St-Jean'
 author = 'Samuel St-Jean'
+language = 'en'
 
 # The full version, including alpha/beta/rc tags
-release = 'v0.2'
+release = 'v0.2.1'
 
 # If your documentation needs a minimal Sphinx version, state it here.
 #
@@ -38,11 +39,11 @@
               'sphinx.ext.mathjax',
               'sphinx.ext.viewcode',
               'sphinx.ext.napoleon',
-              'recommonmark']
+              'myst_parser']
 
 autoapi_type = 'python'
 autoapi_dirs = ['../dpr']
-autoapi_ignore = ["dpr/tests/test_*.py"]
+autoapi_ignore = ["*/tests/*.py"]
 
 
 # Add any paths that contain templates here, relative to this directory.

docs/index.rst

@@ -6,7 +6,9 @@ This is the documentation detailing the internal of 'Reducing variability in alo
 It is most easily understood by looking at the code of each function since it contains comments about design choices and usage.
 
 You can find the original paper and full details of the algorithm as presented in
-::
+
+.. code-block:: bash
+
     Samuel St-Jean, Maxime Chamberland, Max A. Viergever, Alexander Leemans,
     Reducing variability in along-tract analysis with diffusion profile realignment,
     NeuroImage, Volume 199, 2019, Pages 663-679

docs/requirements.txt

@@ -1,2 +1,3 @@
 sphinx-autoapi
-sphinx >= 3.0
+sphinx >= 3.0
+myst-parser

pyproject.toml

@@ -1,3 +1,22 @@
 [build-system]
 requires = ["setuptools>=61.0"]
 build-backend = "setuptools.build_meta"
+
+[project]
+name = "dpr"
+version = '0.2.1'
+requires-python = ">=3.7"
+dependencies = ['numpy>=1.10',
+                'scipy>=0.19',
+                'matplotlib>=2.0']
+description = 'Implementation of "Reducing variability in along-tract analysis with diffusion profile realignment".'
+readme = "README.md"
+license = {text = "MIT License"}
+authors = [
+  {name = "Samuel St-Jean", email = "[email protected]"}
+]
+
+[project.urls]
+Homepage = "https://github.com/samuelstjean/dpr"
+Documentation = "https://dpr.readthedocs.io/en/latest/"
+Changelog = "https://github.com/samuelstjean/dpr/blob/master/CHANGELOG.md"

setup.py

@@ -1,20 +1,7 @@
 from setuptools import setup, find_packages
 
-with open('README.md', encoding='utf-8') as f:
-    long_description = f.read()
+scripts=['scripts/dpr',
+         'scripts/dpr_make_fancy_graph']
 
-setup(
-    name='dpr',
-    version='0.2',
-    author='Samuel St-Jean',
-    packages=find_packages(),
-    scripts=['scripts/dpr', 'scripts/dpr_make_fancy_graph'],
-    url='https://github.com/samuelstjean/dpr',
-    license='MIT',
-    description='Implementation of "Reducing variability in along-tract analysis with diffusion profile realignment".',
-    long_description=long_description,
-    long_description_content_type='text/markdown',
-    install_requires=['numpy>=1.10',
-                      'scipy>=0.19',
-                      'matplotlib>=2.0'],
-)
+setup(scripts=scripts,
+      packages=find_packages())