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Miscellaneous minor build infrastructure and code fixes #1807

Merged
merged 6 commits into from
Jul 17, 2024
Merged

Miscellaneous minor build infrastructure and code fixes #1807

merged 6 commits into from
Jul 17, 2024

Commits on Jul 16, 2024

  1. Ignore and clean test/*/FAIL* for six subdirectories 

    These files can appear in base_mods, fastq, mpileup, and sam_filter
as well as faidx and tabix.
    @jmarshall
    jmarshall committed Jul 16, 2024
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  2. Fix comment header to use @CO\t as per other comment headers

    @jmarshall
    jmarshall committed Jul 16, 2024
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  3. Remove extraneous inclusion and add missing dependency

    @jmarshall
    jmarshall committed Jul 16, 2024
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  4. Remove last traces of previously deleted bgzf_idx_amend_last() 

    As noted in samtools#1722, this function was removed in PR samtools#1672.
    @jmarshall
    jmarshall committed Jul 16, 2024
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  5. Use isspace_c() et al in annot-tsv.c

    @jmarshall
    jmarshall committed Jul 16, 2024
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Commits on Jul 17, 2024

  1. Minor corrections to system headers 

    Plain getopt() is declared in <unistd.h>; strcasecmp() et al are only
portably declared in <strings.h>.
    @jmarshall
    jmarshall committed Jul 17, 2024
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