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3 changes: 2 additions & 1 deletion ccall.c
Original file line number Diff line number Diff line change
Expand Up @@ -141,7 +141,8 @@ static int update_bcf1(call_t *call, bcf1_t *rec, const bcf_p1rst_t *pr, double
int has_I16, is_var;
float fq, r;
anno16_t a;
float tmpf[4], tmpi;
float tmpf[4];
int32_t tmpi;

bcf_get_info_float(call->hdr, rec, "I16", &call->anno16, &call->n16);

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3 changes: 2 additions & 1 deletion mcall.c
Original file line number Diff line number Diff line change
Expand Up @@ -1659,7 +1659,8 @@ int mcall(call_t *call, bcf1_t *rec)
int32_t dp[4]; dp[0] = call->anno16[0]; dp[1] = call->anno16[1]; dp[2] = call->anno16[2]; dp[3] = call->anno16[3];
bcf_update_info_int32(call->hdr, rec, "DP4", dp, 4);

int32_t mq = (call->anno16[8]+call->anno16[10])/(call->anno16[0]+call->anno16[1]+call->anno16[2]+call->anno16[3]);
int32_t dp4_sum = call->anno16[0]+call->anno16[1]+call->anno16[2]+call->anno16[3];
int32_t mq = dp4_sum > 0 ? (call->anno16[8]+call->anno16[10])/dp4_sum : 0;
bcf_update_info_int32(call->hdr, rec, "MQ", &mq, 1);

if ( call->output_tags & CALL_FMT_PV4 )
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