Note: This package is still under very active development.
Check out the docs for installation instructions.
Tutorials are available here.
Learn how SPArrOW can be integrated into your workflow in different ways.
See here for info on how to contribute to SPArrOW.
Check license under license. SPArrOW is free for academic usage. For commercial usage, please contact Saeyslab.
If you encounter any problems, please file an issue along with a detailed description.
Our article currently is available as preprint. You can cite us as follows: @article{pollaris2024sparrow,
title={SPArrOW: a flexible, interactive and scalable pipeline for spatial transcriptomics analysis},
author={Pollaris, Lotte and Vanneste, Bavo and Rombaut, Benjamin and Defauw, Arne and Vernaillen, Frank and Mortier, Julien and Vanhenden, Wout and Martens, Liesbet and Thon{'e}, Tinne and Hastir, Jean-Francois and others},
journal={bioRxiv},
pages={2024--07},
year={2024},
publisher={Cold Spring Harbor Laboratory} }
Code to replicate the analysis of the paper can be found here: https://github.com/lopollar/SPArrOW_scripts