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New Tool: hts_ExtractUMI #257

Merged
merged 17 commits into from
Apr 13, 2024
Merged

New Tool: hts_ExtractUMI #257

merged 17 commits into from
Apr 13, 2024

Commits on Mar 30, 2024

  1. ExtractUMI init

    @bnjenner
    bnjenner committed Mar 30, 2024
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  2. Read number handler

    @bnjenner
    bnjenner committed Mar 30, 2024
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  3. extract_umi function cleanup

    @bnjenner
    bnjenner committed Mar 30, 2024
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  4. hts_ExtractUMI help update

    @bnjenner
    bnjenner committed Mar 30, 2024
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Commits on Mar 31, 2024

  1. UMI Quality Threshold

    @bnjenner
    bnjenner committed Mar 31, 2024
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  2. update str compare and help page

    @bnjenner
    bnjenner committed Mar 31, 2024
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Commits on Apr 2, 2024

  1. hts_ExtractUMI restructure + N and Homopolymer filter

    @bnjenner
    bnjenner committed Apr 2, 2024
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  2. hts_ExtractUMI help typo fix

    @bnjenner
    bnjenner committed Apr 2, 2024
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  3. bad cast fix, oops lol

    @bnjenner
    bnjenner committed Apr 2, 2024
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  4. write_options cast fix, char

    @bnjenner
    bnjenner committed Apr 2, 2024
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  5. added support for PE UMIs and added UMI struct

    @bnjenner
    bnjenner committed Apr 2, 2024
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Commits on Apr 12, 2024

  1. check_char_range() to check_values(), more general use

    @bnjenner
    bnjenner committed Apr 12, 2024
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Commits on Apr 13, 2024

  1. regression tests

    @bnjenner
    bnjenner committed Apr 13, 2024
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  2. test json was not using default parameters

    @bnjenner
    bnjenner committed Apr 13, 2024
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  3. hts_ExtractUMI test json fix... again

    @bnjenner
    bnjenner committed Apr 13, 2024
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  4. hts_ExtractUMI test json fix... again

    @bnjenner
    bnjenner committed Apr 13, 2024
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  5. copy fix (read.h) and description update for hts_ExtractUMI

    @bnjenner
    bnjenner committed Apr 13, 2024
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