hts_ExtractUMI: new parameters #181
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name: C++ CI | |
on: | |
push: | |
branches: [ master ] | |
pull_request: | |
branches: [ master ] | |
jobs: | |
## note the environment is preserved over one job only, so we only use one job | |
build_and_test: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- name: install boost libs | |
run: sudo apt-get install libboost-dev libboost-system-dev libboost-program-options-dev libboost-iostreams-dev libboost-filesystem-dev jq | |
- name: make build dir | |
run: mkdir build&&cd build | |
- name: cmake | |
working-directory: ./build | |
run: cmake -DCMAKE_BUILD_TYPE=Release .. | |
- name: make | |
working-directory: ./build | |
run: make all | |
- name: test | |
working-directory: ./build | |
run: make test | |
- name: regression | |
working-directory: ./regression | |
run: ./regression.sh ../build test | |
- uses: actions/upload-artifact@v2 | |
if: always() | |
with: | |
name: regression_data | |
path: regression/*.test.tab6.gz | |
clang_build_and_test: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- name: install boost libs | |
run: sudo apt-get install libboost-dev libboost-system-dev libboost-program-options-dev libboost-iostreams-dev libboost-filesystem-dev clang jq | |
- name: make build dir | |
run: mkdir build&&cd build | |
- name: cmake | |
working-directory: ./build | |
run: export CC=clang && export CXX=clang++ && cmake -DCMAKE_BUILD_TYPE=Debug .. | |
- name: make | |
working-directory: ./build | |
run: make all | |
- name: test | |
working-directory: ./build | |
run: make test | |
- name: regression | |
working-directory: ./regression | |
run: ./regression.sh ../build test | |
- uses: actions/upload-artifact@v2 | |
if: always() | |
with: | |
name: regression_data_clang | |
path: regression/*.test.tab6.gz |