edit read.h to fix read ID, moved the bam tags to the end of the read #192
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| name: C++ CI | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| ## note the environment is preserved over one job only, so we only use one job | |
| build_and_test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: install boost libs | |
| run: sudo apt-get install libboost-dev libboost-system-dev libboost-program-options-dev libboost-iostreams-dev libboost-filesystem-dev jq | |
| - name: make build dir | |
| run: mkdir build&&cd build | |
| - name: cmake | |
| working-directory: ./build | |
| run: cmake -DCMAKE_BUILD_TYPE=Release .. | |
| - name: make | |
| working-directory: ./build | |
| run: make all | |
| - name: test | |
| working-directory: ./build | |
| run: make test | |
| - name: regression | |
| working-directory: ./regression | |
| run: ./regression.sh ../build test | |
| - uses: actions/upload-artifact@v2 | |
| if: always() | |
| with: | |
| name: regression_data | |
| path: regression/*.test.tab6.gz | |
| clang_build_and_test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: install boost libs | |
| run: sudo apt-get install libboost-dev libboost-system-dev libboost-program-options-dev libboost-iostreams-dev libboost-filesystem-dev clang jq | |
| - name: make build dir | |
| run: mkdir build&&cd build | |
| - name: cmake | |
| working-directory: ./build | |
| run: export CC=clang && export CXX=clang++ && cmake -DCMAKE_BUILD_TYPE=Debug .. | |
| - name: make | |
| working-directory: ./build | |
| run: make all | |
| - name: test | |
| working-directory: ./build | |
| run: make test | |
| - name: regression | |
| working-directory: ./regression | |
| run: ./regression.sh ../build test | |
| - uses: actions/upload-artifact@v2 | |
| if: always() | |
| with: | |
| name: regression_data_clang | |
| path: regression/*.test.tab6.gz |