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SNP_Database

This is currently just a 'proof of concept'. It uploads genotyping data from Illumina GTC files into a SQLite database. The data can then be accessed using Flask as a graphic user interface.

Requirements:

  • GTC files (Illumina)
  • BPM file (Illumina) corresponding to GTC files

Dependencies:

  • The "module" folder from Illumina's BeadArrayFiles repository
  • sqlite3
  • flask
  • easygui
  • logging

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