Merge pull request #362 from rseng/update/software-2023-12-24

Update from update/software-2023-12-24
rseng · Dec 24, 2023 · 18efd91 · 18efd91
2 parents c6ed339 + 26309f4
commit 18efd91
Show file tree

Hide file tree

Showing 52 changed files with 5,736 additions and 2 deletions.
diff --git a/database/github/CederGroupHub/sparse-lm/metadata.json b/database/github/CederGroupHub/sparse-lm/metadata.json
@@ -0,0 +1,38 @@
+{
+    "parser": "github",
+    "uid": "github/CederGroupHub/sparse-lm",
+    "url": "https://github.com/CederGroupHub/sparse-lm",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.10246640",
+        "name": "sparse-lm",
+        "url": "https://github.com/CederGroupHub/sparse-lm",
+        "full_name": "CederGroupHub/sparse-lm",
+        "html_url": "https://github.com/CederGroupHub/sparse-lm",
+        "description": "Sparse Linear Regression Models",
+        "created_at": "2022-05-03T22:49:39Z",
+        "updated_at": "2023-11-17T18:04:30Z",
+        "clone_url": "https://github.com/CederGroupHub/sparse-lm.git",
+        "homepage": "https://cedergrouphub.github.io/sparse-lm",
+        "size": 12450,
+        "stargazers_count": 15,
+        "watchers_count": 15,
+        "language": "Python",
+        "open_issues_count": 3,
+        "license": {
+            "key": "other",
+            "name": "Other",
+            "spdx_id": "NOASSERTION",
+            "url": null,
+            "node_id": "MDc6TGljZW5zZTA="
+        },
+        "subscribers_count": 4,
+        "owner": {
+            "html_url": "https://github.com/CederGroupHub",
+            "avatar_url": "https://avatars.githubusercontent.com/u/34322218?v=4",
+            "login": "CederGroupHub",
+            "type": "Organization"
+        },
+        "timestamp": "2023-12-24 00:35:29.427600",
+        "avatar": "https://avatars.githubusercontent.com/u/34322218?v=4"
+    }
+}
diff --git a/database/github/Libensemble/libensemble/metadata.json b/database/github/Libensemble/libensemble/metadata.json
@@ -0,0 +1,38 @@
+{
+    "parser": "github",
+    "uid": "github/Libensemble/libensemble",
+    "url": "https://github.com/Libensemble/libensemble",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.10391387",
+        "name": "libensemble",
+        "url": "https://github.com/Libensemble/libensemble",
+        "full_name": "Libensemble/libensemble",
+        "html_url": "https://github.com/Libensemble/libensemble",
+        "description": "A Python toolkit for coordinating asynchronous and dynamic ensembles of calculations.",
+        "created_at": "2016-12-12T23:43:44Z",
+        "updated_at": "2023-12-15T14:41:11Z",
+        "clone_url": "https://github.com/Libensemble/libensemble.git",
+        "homepage": "https://libensemble.readthedocs.io/",
+        "size": 25440,
+        "stargazers_count": 58,
+        "watchers_count": 58,
+        "language": "Python",
+        "open_issues_count": 27,
+        "license": {
+            "key": "bsd-3-clause",
+            "name": "BSD 3-Clause \"New\" or \"Revised\" License",
+            "spdx_id": "BSD-3-Clause",
+            "url": "https://api.github.com/licenses/bsd-3-clause",
+            "node_id": "MDc6TGljZW5zZTU="
+        },
+        "subscribers_count": 10,
+        "owner": {
+            "html_url": "https://github.com/Libensemble",
+            "avatar_url": "https://avatars.githubusercontent.com/u/24534232?v=4",
+            "login": "Libensemble",
+            "type": "Organization"
+        },
+        "timestamp": "2023-12-24 00:35:31.832977",
+        "avatar": "https://avatars.githubusercontent.com/u/24534232?v=4"
+    }
+}
diff --git a/database/github/MaceKuailv/seaduck/metadata.json b/database/github/MaceKuailv/seaduck/metadata.json
@@ -0,0 +1,37 @@
+{
+    "parser": "github",
+    "uid": "github/MaceKuailv/seaduck",
+    "url": "https://github.com/MaceKuailv/seaduck",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.10183123",
+        "name": "seaduck",
+        "url": "https://github.com/MaceKuailv/seaduck",
+        "full_name": "MaceKuailv/seaduck",
+        "html_url": "https://github.com/MaceKuailv/seaduck",
+        "description": "A python package that interpolates data from ocean dataset from both Eulerian and Lagrangian perspective.",
+        "created_at": "2022-09-28T22:04:12Z",
+        "updated_at": "2023-12-16T23:18:56Z",
+        "clone_url": "https://github.com/MaceKuailv/seaduck.git",
+        "size": 101072,
+        "stargazers_count": 8,
+        "watchers_count": 8,
+        "language": "Python",
+        "open_issues_count": 5,
+        "license": {
+            "key": "apache-2.0",
+            "name": "Apache License 2.0",
+            "spdx_id": "Apache-2.0",
+            "url": "https://api.github.com/licenses/apache-2.0",
+            "node_id": "MDc6TGljZW5zZTI="
+        },
+        "subscribers_count": 4,
+        "owner": {
+            "html_url": "https://github.com/MaceKuailv",
+            "avatar_url": "https://avatars.githubusercontent.com/u/52629492?v=4",
+            "login": "MaceKuailv",
+            "type": "User"
+        },
+        "timestamp": "2023-12-24 00:35:30.387765",
+        "avatar": "https://avatars.githubusercontent.com/u/52629492?v=4"
+    }
+}
diff --git a/database/github/OSeMOSYS/otoole/metadata.json b/database/github/OSeMOSYS/otoole/metadata.json
@@ -0,0 +1,44 @@
+{
+    "parser": "github",
+    "uid": "github/OSeMOSYS/otoole",
+    "url": "https://github.com/OSeMOSYS/otoole",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.10360538",
+        "name": "otoole",
+        "url": "https://github.com/OSeMOSYS/otoole",
+        "full_name": "OSeMOSYS/otoole",
+        "html_url": "https://github.com/OSeMOSYS/otoole",
+        "description": "OSeMOSYS Tools for Energy",
+        "created_at": "2019-09-19T15:56:17Z",
+        "updated_at": "2023-12-21T18:30:38Z",
+        "clone_url": "https://github.com/OSeMOSYS/otoole.git",
+        "homepage": "https://otoole.readthedocs.io",
+        "size": 2312,
+        "stargazers_count": 19,
+        "watchers_count": 19,
+        "language": "Python",
+        "open_issues_count": 43,
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 8,
+        "owner": {
+            "html_url": "https://github.com/OSeMOSYS",
+            "avatar_url": "https://avatars.githubusercontent.com/u/14215860?v=4",
+            "login": "OSeMOSYS",
+            "type": "Organization"
+        },
+        "topics": [
+            "energy",
+            "osemosys",
+            "energy-system-modelling",
+            "energy-system"
+        ],
+        "timestamp": "2023-12-24 00:35:29.909359",
+        "avatar": "https://avatars.githubusercontent.com/u/14215860?v=4"
+    }
+}
diff --git a/database/github/UgoLomoio/gtex_visualizer/metadata.json b/database/github/UgoLomoio/gtex_visualizer/metadata.json
@@ -0,0 +1,35 @@
+{
+    "parser": "github",
+    "uid": "github/UgoLomoio/gtex_visualizer",
+    "url": "https://github.com/UgoLomoio/gtex_visualizer",
+    "data": {
+        "doi": "10.1093/BIOINFORMATICS/BTAD303",
+        "name": "gtex_visualizer",
+        "url": "https://github.com/UgoLomoio/gtex_visualizer",
+        "full_name": "UgoLomoio/gtex_visualizer",
+        "html_url": "https://github.com/UgoLomoio/gtex_visualizer",
+        "created_at": "2022-10-27T11:47:16Z",
+        "updated_at": "2023-05-20T00:53:57Z",
+        "clone_url": "https://github.com/UgoLomoio/gtex_visualizer.git",
+        "size": 9067,
+        "stargazers_count": 1,
+        "watchers_count": 1,
+        "language": "Python",
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 1,
+        "owner": {
+            "html_url": "https://github.com/UgoLomoio",
+            "avatar_url": "https://avatars.githubusercontent.com/u/87126937?v=4",
+            "login": "UgoLomoio",
+            "type": "User"
+        },
+        "timestamp": "2023-12-24 00:36:32.142985",
+        "avatar": "https://avatars.githubusercontent.com/u/87126937?v=4"
+    }
+}
diff --git a/database/github/adrientaudiere/MiscMetabar/metadata.json b/database/github/adrientaudiere/MiscMetabar/metadata.json
@@ -0,0 +1,44 @@
+{
+    "parser": "github",
+    "uid": "github/adrientaudiere/MiscMetabar",
+    "url": "https://github.com/adrientaudiere/MiscMetabar",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.10370781",
+        "name": "MiscMetabar",
+        "url": "https://github.com/adrientaudiere/MiscMetabar",
+        "full_name": "adrientaudiere/MiscMetabar",
+        "html_url": "https://github.com/adrientaudiere/MiscMetabar",
+        "description": "R package MiscMetabar: Miscellaneous functions for metabarcoding analysis",
+        "created_at": "2020-06-02T10:02:00Z",
+        "updated_at": "2023-12-08T13:14:50Z",
+        "clone_url": "https://github.com/adrientaudiere/MiscMetabar.git",
+        "homepage": "https://adrientaudiere.github.io/MiscMetabar/",
+        "size": 167904,
+        "stargazers_count": 7,
+        "watchers_count": 7,
+        "language": "R",
+        "license": {
+            "key": "gpl-3.0",
+            "name": "GNU General Public License v3.0",
+            "spdx_id": "GPL-3.0",
+            "url": "https://api.github.com/licenses/gpl-3.0",
+            "node_id": "MDc6TGljZW5zZTk="
+        },
+        "subscribers_count": 2,
+        "owner": {
+            "html_url": "https://github.com/adrientaudiere",
+            "avatar_url": "https://avatars.githubusercontent.com/u/6680165?v=4",
+            "login": "adrientaudiere",
+            "type": "User"
+        },
+        "topics": [
+            "ecology",
+            "metabarcoding",
+            "ngs-analysis",
+            "package",
+            "r"
+        ],
+        "timestamp": "2023-12-24 00:35:30.874235",
+        "avatar": "https://avatars.githubusercontent.com/u/6680165?v=4"
+    }
+}
diff --git a/database/github/dirostri/CREPE/metadata.json b/database/github/dirostri/CREPE/metadata.json
@@ -0,0 +1,34 @@
+{
+    "parser": "github",
+    "uid": "github/dirostri/CREPE",
+    "url": "https://github.com/dirostri/CREPE",
+    "data": {
+        "doi": "10.1093/BIOADV/VBAD055",
+        "name": "CREPE",
+        "url": "https://github.com/dirostri/CREPE",
+        "full_name": "dirostri/CREPE",
+        "html_url": "https://github.com/dirostri/CREPE",
+        "description": "GitHub Repository for CREPE: A tool for Transcription Factor Cataloguing",
+        "created_at": "2022-09-15T14:41:30Z",
+        "updated_at": "2022-11-11T16:07:58Z",
+        "clone_url": "https://github.com/dirostri/CREPE.git",
+        "size": 20616,
+        "language": "R",
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 1,
+        "owner": {
+            "html_url": "https://github.com/dirostri",
+            "avatar_url": "https://avatars.githubusercontent.com/u/46599183?v=4",
+            "login": "dirostri",
+            "type": "User"
+        },
+        "timestamp": "2023-12-24 00:36:33.524889",
+        "avatar": "https://avatars.githubusercontent.com/u/46599183?v=4"
+    }
+}
diff --git a/database/github/interactivereport/scRNASequest/metadata.json b/database/github/interactivereport/scRNASequest/metadata.json
@@ -0,0 +1,29 @@
+{
+    "parser": "github",
+    "uid": "github/interactivereport/scRNASequest",
+    "url": "https://github.com/interactivereport/scRNAsequest",
+    "data": {
+        "doi": "10.1186/S12864-023-09332-2",
+        "name": "scRNAsequest",
+        "url": "https://github.com/interactivereport/scRNAsequest",
+        "full_name": "interactivereport/scRNAsequest",
+        "html_url": "https://github.com/interactivereport/scRNAsequest",
+        "description": "scRNASequest: an ecosystem of scRNA-seq analysis, visualization and publishing",
+        "created_at": "2022-03-15T19:20:06Z",
+        "updated_at": "2023-12-20T23:20:38Z",
+        "clone_url": "https://github.com/interactivereport/scRNAsequest.git",
+        "size": 46486,
+        "stargazers_count": 15,
+        "watchers_count": 15,
+        "language": "R",
+        "subscribers_count": 5,
+        "owner": {
+            "html_url": "https://github.com/interactivereport",
+            "avatar_url": "https://avatars.githubusercontent.com/u/29576524?v=4",
+            "login": "interactivereport",
+            "type": "User"
+        },
+        "timestamp": "2023-12-24 00:36:33.036749",
+        "avatar": "https://avatars.githubusercontent.com/u/29576524?v=4"
+    }
+}
diff --git a/database/github/jumphone/inferloop/metadata.json b/database/github/jumphone/inferloop/metadata.json
@@ -0,0 +1,44 @@
+{
+    "parser": "github",
+    "uid": "github/jumphone/inferloop",
+    "url": "https://github.com/jumphone/InferLoop",
+    "data": {
+        "doi": "10.1093/BIB/BBAD166",
+        "name": "InferLoop",
+        "url": "https://github.com/jumphone/InferLoop",
+        "full_name": "jumphone/InferLoop",
+        "html_url": "https://github.com/jumphone/InferLoop",
+        "description": "InferLoop: leveraging single-cell chromatin accessibility for the signal of chromatin loop",
+        "created_at": "2022-10-26T02:20:17Z",
+        "updated_at": "2023-04-12T20:08:55Z",
+        "clone_url": "https://github.com/jumphone/InferLoop.git",
+        "size": 5655,
+        "stargazers_count": 2,
+        "watchers_count": 2,
+        "language": "R",
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 1,
+        "owner": {
+            "html_url": "https://github.com/jumphone",
+            "avatar_url": "https://avatars.githubusercontent.com/u/14286721?v=4",
+            "login": "jumphone",
+            "type": "User"
+        },
+        "topics": [
+            "chromatin-structure",
+            "scatac-seq",
+            "single-cell-3d-genome-structure",
+            "single-cell-chromatin-accessibility",
+            "single-cell-multi-omics",
+            "spatial-chromatin-accessibility"
+        ],
+        "timestamp": "2023-12-24 00:36:34.443109",
+        "avatar": "https://avatars.githubusercontent.com/u/14286721?v=4"
+    }
+}
diff --git a/database/github/liuhong-jia/scAnno/metadata.json b/database/github/liuhong-jia/scAnno/metadata.json
@@ -0,0 +1,29 @@
+{
+    "parser": "github",
+    "uid": "github/liuhong-jia/scAnno",
+    "url": "https://github.com/liuhong-jia/scAnno",
+    "data": {
+        "doi": "10.1093/BIB/BBAD179",
+        "name": "scAnno",
+        "url": "https://github.com/liuhong-jia/scAnno",
+        "full_name": "liuhong-jia/scAnno",
+        "html_url": "https://github.com/liuhong-jia/scAnno",
+        "created_at": "2022-11-10T13:26:44Z",
+        "updated_at": "2023-11-16T09:36:10Z",
+        "clone_url": "https://github.com/liuhong-jia/scAnno.git",
+        "size": 244870,
+        "stargazers_count": 21,
+        "watchers_count": 21,
+        "language": "R",
+        "open_issues_count": 4,
+        "subscribers_count": 1,
+        "owner": {
+            "html_url": "https://github.com/liuhong-jia",
+            "avatar_url": "https://avatars.githubusercontent.com/u/115637576?v=4",
+            "login": "liuhong-jia",
+            "type": "User"
+        },
+        "timestamp": "2023-12-24 00:36:32.611622",
+        "avatar": "https://avatars.githubusercontent.com/u/115637576?v=4"
+    }
+}