Merge pull request #366 from rseng/update/software-2024-03-17

Update from update/software-2024-03-17
rseng · Mar 17, 2024 · 0cb4bb9 · 0cb4bb9
2 parents 5bc5c2b + e1b57ce
commit 0cb4bb9
Show file tree

Hide file tree

Showing 65 changed files with 77,028 additions and 69,788 deletions.
diff --git a/database/github/BonsonW/slow5curl/metadata.json b/database/github/BonsonW/slow5curl/metadata.json
@@ -0,0 +1,49 @@
+{
+    "parser": "github",
+    "uid": "github/BonsonW/slow5curl",
+    "url": "https://github.com/BonsonW/slow5curl",
+    "data": {
+        "name": "slow5curl",
+        "url": "https://github.com/BonsonW/slow5curl",
+        "full_name": "BonsonW/slow5curl",
+        "html_url": "https://github.com/BonsonW/slow5curl",
+        "private": false,
+        "description": "A library and tool for accessing remote BLOW5 files.",
+        "created_at": "2023-07-14T06:47:45Z",
+        "updated_at": "2023-12-04T02:41:12Z",
+        "clone_url": "https://github.com/BonsonW/slow5curl.git",
+        "homepage": "https://bonsonw.github.io/slow5curl/",
+        "size": 19951,
+        "stargazers_count": 22,
+        "watchers_count": 22,
+        "language": "C",
+        "open_issues_count": 0,
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 3,
+        "owner": {
+            "html_url": "https://github.com/BonsonW",
+            "avatar_url": "https://avatars.githubusercontent.com/u/57890355?v=4",
+            "login": "BonsonW",
+            "type": "User"
+        },
+        "topics": [
+            "api",
+            "c",
+            "fetching-data-from-server",
+            "library",
+            "slow5",
+            "tool",
+            "blow5",
+            "command-line-tool",
+            "curl"
+        ],
+        "timestamp": "2024-03-17 00:35:25.467405",
+        "avatar": "https://avatars.githubusercontent.com/u/57890355?v=4"
+    }
+}
diff --git a/database/github/EddyRivasLab/infernal/metadata.json b/database/github/EddyRivasLab/infernal/metadata.json
@@ -0,0 +1,36 @@
+{
+    "parser": "github",
+    "uid": "github/EddyRivasLab/infernal",
+    "url": "https://github.com/EddyRivasLab/infernal",
+    "data": {
+        "doi": "10.1093/bioinformatics/btt509",
+        "name": "infernal",
+        "url": "https://github.com/EddyRivasLab/infernal",
+        "full_name": "EddyRivasLab/infernal",
+        "html_url": "https://github.com/EddyRivasLab/infernal",
+        "description": "RNA secondary structure/sequence profiles for homology search and alignment",
+        "created_at": "2015-08-30T03:17:01Z",
+        "updated_at": "2024-03-08T20:12:58Z",
+        "clone_url": "https://github.com/EddyRivasLab/infernal.git",
+        "size": 54314,
+        "stargazers_count": 84,
+        "watchers_count": 84,
+        "language": "C",
+        "license": {
+            "key": "other",
+            "name": "Other",
+            "spdx_id": "NOASSERTION",
+            "url": null,
+            "node_id": "MDc6TGljZW5zZTA="
+        },
+        "subscribers_count": 13,
+        "owner": {
+            "html_url": "https://github.com/EddyRivasLab",
+            "avatar_url": "https://avatars.githubusercontent.com/u/13962260?v=4",
+            "login": "EddyRivasLab",
+            "type": "Organization"
+        },
+        "timestamp": "2024-03-17 00:35:27.242102",
+        "avatar": "https://avatars.githubusercontent.com/u/13962260?v=4"
+    }
+}
diff --git a/database/github/FAU-LAP/NOMAD-CAMELS/metadata.json b/database/github/FAU-LAP/NOMAD-CAMELS/metadata.json
@@ -0,0 +1,37 @@
+{
+    "parser": "github",
+    "uid": "github/FAU-LAP/NOMAD-CAMELS",
+    "url": "https://github.com/FAU-LAP/NOMAD-CAMELS",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.10793952",
+        "name": "NOMAD-CAMELS",
+        "url": "https://github.com/FAU-LAP/NOMAD-CAMELS",
+        "full_name": "FAU-LAP/NOMAD-CAMELS",
+        "html_url": "https://github.com/FAU-LAP/NOMAD-CAMELS",
+        "description": "We are developing a configurable measurement software (CAMELS), targeted towards the requirements of experimental solid-state physics. Here many experiments utilize a multitude of measurement devices used in dynamically changing setups.",
+        "created_at": "2021-11-15T12:59:56Z",
+        "updated_at": "2024-02-26T11:03:56Z",
+        "clone_url": "https://github.com/FAU-LAP/NOMAD-CAMELS.git",
+        "homepage": "https://fau-lap.github.io/NOMAD-CAMELS/",
+        "size": 64157,
+        "stargazers_count": 6,
+        "watchers_count": 6,
+        "language": "Python",
+        "license": {
+            "key": "lgpl-2.1",
+            "name": "GNU Lesser General Public License v2.1",
+            "spdx_id": "LGPL-2.1",
+            "url": "https://api.github.com/licenses/lgpl-2.1",
+            "node_id": "MDc6TGljZW5zZTEx"
+        },
+        "subscribers_count": 1,
+        "owner": {
+            "html_url": "https://github.com/FAU-LAP",
+            "avatar_url": "https://avatars.githubusercontent.com/u/60480039?v=4",
+            "login": "FAU-LAP",
+            "type": "Organization"
+        },
+        "timestamp": "2024-03-17 00:34:21.067799",
+        "avatar": "https://avatars.githubusercontent.com/u/60480039?v=4"
+    }
+}
diff --git a/database/github/FabianPlum/OmniTrax/metadata.json b/database/github/FabianPlum/OmniTrax/metadata.json
@@ -0,0 +1,45 @@
+{
+    "parser": "github",
+    "uid": "github/FabianPlum/OmniTrax",
+    "url": "https://github.com/FabianPlum/OmniTrax",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.10817891",
+        "name": "OmniTrax",
+        "url": "https://github.com/FabianPlum/OmniTrax",
+        "full_name": "FabianPlum/OmniTrax",
+        "html_url": "https://github.com/FabianPlum/OmniTrax",
+        "description": "Deep learning-driven multi animal tracking and pose estimation add-on for Blender",
+        "created_at": "2021-11-08T15:07:16Z",
+        "updated_at": "2024-03-16T12:31:53Z",
+        "clone_url": "https://github.com/FabianPlum/OmniTrax.git",
+        "size": 89262,
+        "stargazers_count": 19,
+        "watchers_count": 19,
+        "language": "Python",
+        "open_issues_count": 1,
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 4,
+        "owner": {
+            "html_url": "https://github.com/FabianPlum",
+            "avatar_url": "https://avatars.githubusercontent.com/u/26245490?v=4",
+            "login": "FabianPlum",
+            "type": "User"
+        },
+        "topics": [
+            "blender",
+            "deeplabcut",
+            "deeplearning",
+            "object-detection",
+            "tracking",
+            "yolo"
+        ],
+        "timestamp": "2024-03-17 00:34:18.988906",
+        "avatar": "https://avatars.githubusercontent.com/u/26245490?v=4"
+    }
+}
diff --git a/database/github/FrederickHuangLin/ANCOMBC/metadata.json b/database/github/FrederickHuangLin/ANCOMBC/metadata.json
@@ -0,0 +1,43 @@
+{
+    "parser": "github",
+    "uid": "github/FrederickHuangLin/ANCOMBC",
+    "url": "https://github.com/FrederickHuangLin/ANCOMBC",
+    "data": {
+        "name": "ANCOMBC",
+        "url": "https://github.com/FrederickHuangLin/ANCOMBC",
+        "full_name": "FrederickHuangLin/ANCOMBC",
+        "html_url": "https://github.com/FrederickHuangLin/ANCOMBC",
+        "private": false,
+        "description": "Differential abundance (DA) and correlation analyses for microbial absolute abundance data",
+        "created_at": "2020-08-10T03:18:30Z",
+        "updated_at": "2024-01-18T09:16:23Z",
+        "clone_url": "https://github.com/FrederickHuangLin/ANCOMBC.git",
+        "homepage": "https://www.nature.com/articles/s41467-020-17041-7",
+        "size": 445,
+        "stargazers_count": 89,
+        "watchers_count": 89,
+        "language": "R",
+        "open_issues_count": 28,
+        "license": null,
+        "subscribers_count": 8,
+        "owner": {
+            "html_url": "https://github.com/FrederickHuangLin",
+            "avatar_url": "https://avatars.githubusercontent.com/u/7278887?v=4",
+            "login": "FrederickHuangLin",
+            "type": "User"
+        },
+        "topics": [
+            "ancom",
+            "differential-abundance-analysis",
+            "microbiome",
+            "normalization",
+            "sequencing",
+            "correlation",
+            "secom",
+            "ancombc",
+            "ancombc2"
+        ],
+        "timestamp": "2024-03-17 00:35:26.844505",
+        "avatar": "https://avatars.githubusercontent.com/u/7278887?v=4"
+    }
+}
diff --git a/database/github/GenomePathogenAnalysisService/read-it-and-keep/metadata.json b/database/github/GenomePathogenAnalysisService/read-it-and-keep/metadata.json
@@ -0,0 +1,39 @@
+{
+    "parser": "github",
+    "uid": "github/GenomePathogenAnalysisService/read-it-and-keep",
+    "url": "https://github.com/GlobalPathogenAnalysisService/read-it-and-keep",
+    "data": {
+        "name": "read-it-and-keep",
+        "url": "https://github.com/GlobalPathogenAnalysisService/read-it-and-keep",
+        "full_name": "GlobalPathogenAnalysisService/read-it-and-keep",
+        "html_url": "https://github.com/GlobalPathogenAnalysisService/read-it-and-keep",
+        "private": false,
+        "description": "Read contamination removal",
+        "created_at": "2021-09-20T12:46:09Z",
+        "updated_at": "2023-12-11T21:03:19Z",
+        "clone_url": "https://github.com/GlobalPathogenAnalysisService/read-it-and-keep.git",
+        "homepage": null,
+        "size": 347,
+        "stargazers_count": 24,
+        "watchers_count": 24,
+        "language": "C",
+        "open_issues_count": 1,
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 5,
+        "owner": {
+            "html_url": "https://github.com/GlobalPathogenAnalysisService",
+            "avatar_url": "https://avatars.githubusercontent.com/u/84399229?v=4",
+            "login": "GlobalPathogenAnalysisService",
+            "type": "Organization"
+        },
+        "topics": [],
+        "timestamp": "2024-03-17 00:35:25.977135",
+        "avatar": "https://avatars.githubusercontent.com/u/84399229?v=4"
+    }
+}
diff --git a/database/github/NSAPH-Software/GPCERF/metadata.json b/database/github/NSAPH-Software/GPCERF/metadata.json
@@ -0,0 +1,36 @@
+{
+    "parser": "github",
+    "uid": "github/NSAPH-Software/GPCERF",
+    "url": "https://github.com/NSAPH-Software/GPCERF",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.10757333",
+        "name": "GPCERF",
+        "url": "https://github.com/NSAPH-Software/GPCERF",
+        "full_name": "NSAPH-Software/GPCERF",
+        "html_url": "https://github.com/NSAPH-Software/GPCERF",
+        "created_at": "2021-11-10T02:19:36Z",
+        "updated_at": "2023-12-22T14:25:04Z",
+        "clone_url": "https://github.com/NSAPH-Software/GPCERF.git",
+        "homepage": "https://NSAPH-Software.github.io/GPCERF/",
+        "size": 12698,
+        "stargazers_count": 9,
+        "watchers_count": 9,
+        "language": "R",
+        "license": {
+            "key": "gpl-3.0",
+            "name": "GNU General Public License v3.0",
+            "spdx_id": "GPL-3.0",
+            "url": "https://api.github.com/licenses/gpl-3.0",
+            "node_id": "MDc6TGljZW5zZTk="
+        },
+        "subscribers_count": 2,
+        "owner": {
+            "html_url": "https://github.com/NSAPH-Software",
+            "avatar_url": "https://avatars.githubusercontent.com/u/99349300?v=4",
+            "login": "NSAPH-Software",
+            "type": "Organization"
+        },
+        "timestamp": "2024-03-17 00:34:19.865980",
+        "avatar": "https://avatars.githubusercontent.com/u/99349300?v=4"
+    }
+}
diff --git a/database/github/RJArthern/WAVI.jl/metadata.json b/database/github/RJArthern/WAVI.jl/metadata.json
@@ -0,0 +1,38 @@
+{
+    "parser": "github",
+    "uid": "github/RJArthern/WAVI.jl",
+    "url": "https://github.com/RJArthern/WAVI.jl",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.10723504",
+        "name": "WAVI.jl",
+        "url": "https://github.com/RJArthern/WAVI.jl",
+        "full_name": "RJArthern/WAVI.jl",
+        "html_url": "https://github.com/RJArthern/WAVI.jl",
+        "description": "WAVI ice sheet model",
+        "created_at": "2020-08-06T17:31:05Z",
+        "updated_at": "2024-03-15T21:22:28Z",
+        "clone_url": "https://github.com/RJArthern/WAVI.jl.git",
+        "homepage": "https://rjarthern.github.io/WAVI.jl/",
+        "size": 19503,
+        "stargazers_count": 25,
+        "watchers_count": 25,
+        "language": "Julia",
+        "open_issues_count": 19,
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 3,
+        "owner": {
+            "html_url": "https://github.com/RJArthern",
+            "avatar_url": "https://avatars.githubusercontent.com/u/69319382?v=4",
+            "login": "RJArthern",
+            "type": "User"
+        },
+        "timestamp": "2024-03-17 00:34:19.377137",
+        "avatar": "https://avatars.githubusercontent.com/u/69319382?v=4"
+    }
+}
diff --git a/database/github/chadagreene/Tide-Model-Driver/metadata.json b/database/github/chadagreene/Tide-Model-Driver/metadata.json
@@ -0,0 +1,36 @@
+{
+    "parser": "github",
+    "uid": "github/chadagreene/Tide-Model-Driver",
+    "url": "https://github.com/chadagreene/Tide-Model-Driver",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.10724881",
+        "name": "Tide-Model-Driver",
+        "url": "https://github.com/chadagreene/Tide-Model-Driver",
+        "full_name": "chadagreene/Tide-Model-Driver",
+        "html_url": "https://github.com/chadagreene/Tide-Model-Driver",
+        "description": "Tide Model Driver for MATLAB, version 3.0",
+        "created_at": "2022-03-05T00:14:32Z",
+        "updated_at": "2024-03-16T06:15:08Z",
+        "clone_url": "https://github.com/chadagreene/Tide-Model-Driver.git",
+        "size": 103500,
+        "stargazers_count": 14,
+        "watchers_count": 14,
+        "language": "MATLAB",
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 4,
+        "owner": {
+            "html_url": "https://github.com/chadagreene",
+            "avatar_url": "https://avatars.githubusercontent.com/u/15901019?v=4",
+            "login": "chadagreene",
+            "type": "User"
+        },
+        "timestamp": "2024-03-17 00:34:20.664541",
+        "avatar": "https://avatars.githubusercontent.com/u/15901019?v=4"
+    }
+}