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1. MathOnco/NeoPredPipe MathOnco/NeoPredPipe Public

   Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.

   Python 110 30

2. MathOnco/EvoFreq MathOnco/EvoFreq Public

   Evolutionary frequency visualization tool of temporal data

   R 22 3

3. VariantFilter VariantFilter Public

   Variant filter for various outputs. These include Octopus, MuTect2, Strelka2, and DRAGEN.

   Python 1

4. Gattaca Gattaca Public

   Base Pair Resolution Mutation Tracking

   Python 3 1

5. MathOnco/HomeostaticEpidermis MathOnco/HomeostaticEpidermis Public

   Homeostatic Epidermis – PNAS Full Codebase

   Java