updates

rraadd88 · Feb 12, 2024 · c590cc6 · c590cc6
1 parent da171e2
commit c590cc6
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Showing 3 changed files with 44 additions and 44 deletions.
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
@@ -14,7 +14,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v2
         with:
-          python-version: 3.7
+          python-version: 3.9
       - name: Install pypa/build
         run: >-
           python -m

diff --git a/setup.py b/setup.py
@@ -32,7 +32,7 @@
 requirements = {
     "base": [
         # 'roux'
-        "roux @ git+https://github.com/rraadd88/roux.git@master",
+        "roux==0.1.1",
         ## requirements from roux
         # 'seaborn',
         # 'numpy>=1.17.3',
@@ -62,7 +62,7 @@
     "gui": [
         "mercury==2.3.7",
         "dna_features_viewer==3.1.3",
-        "chrov @ git+https://github.com/rraadd88/chrov.git@main",
+        "chrov==0.0.2",
     ],
     ## development and maintenance
     "dev": [
@@ -133,7 +133,7 @@ def run(self):
     include_package_data=True,
     entry_points={
         "console_scripts": [
-            "roux = beditor.run:parser.dispatch",
+            "beditor = beditor.run:parser.dispatch",
         ],
     },
     cmdclass={"install": InstallCommand},

diff --git a/tests/test_run.py b/tests/test_run.py
@@ -21,47 +21,47 @@ def test_base_positions():
         force=True,
     )
 
-# def test_base_regions():
-#     set_wd()
-#     return cli(
-#         config_path='inputs/mutations/base/regions.yml',
-#         verbose='INFO',#'DEBUG',
-#         skip=['Visualize'], # skipped because interactive
-#         force=True,
-#     )
+def test_base_regions():
+    set_wd()
+    return cli(
+        config_path='inputs/mutations/base/regions.yml',
+        verbose='INFO',#'DEBUG',
+        skip=['Visualize'], # skipped because interactive
+        force=True,
+    )
 
-# def test_base_regions():
-#     set_wd()
-#     return cli(
-#         config_path='inputs/mutations/base/points.yml',
-#         verbose='INFO',#'DEBUG',
-#         skip=['Visualize'], # skipped because interactive
-#         force=True,
-#     )
+def test_base_regions():
+    set_wd()
+    return cli(
+        config_path='inputs/mutations/base/points.yml',
+        verbose='INFO',#'DEBUG',
+        skip=['Visualize'], # skipped because interactive
+        force=True,
+    )
 
-# def test_protein_positions():
-#     set_wd()
-#     return cli(
-#         config_path='inputs/mutations/protein/positions.yml',
-#         verbose='INFO',#'DEBUG',
-#         skip=['Visualize'], # skipped because interactive
-#         force=True,
-#     )
+def test_protein_positions():
+    set_wd()
+    return cli(
+        config_path='inputs/mutations/protein/positions.yml',
+        verbose='INFO',#'DEBUG',
+        skip=['Visualize'], # skipped because interactive
+        force=True,
+    )
 
-# def test_protein_regions():
-#     set_wd()
-#     return cli(
-#         config_path='inputs/mutations/protein/regions.yml',
-#         verbose='INFO',#'DEBUG',
-#         skip=['Visualize'], # skipped because interactive
-#         force=True,
-#     )
+def test_protein_regions():
+    set_wd()
+    return cli(
+        config_path='inputs/mutations/protein/regions.yml',
+        verbose='INFO',#'DEBUG',
+        skip=['Visualize'], # skipped because interactive
+        force=True,
+    )
 
-# def test_protein_regions():
-#     set_wd()
-#     return cli(
-#         config_path='inputs/mutations/protein/points.yml',
-#         verbose='INFO',#'DEBUG',
-#         skip=['Visualize'], # skipped because interactive
-#         force=True,
-#     )
+def test_protein_regions():
+    set_wd()
+    return cli(
+        config_path='inputs/mutations/protein/points.yml',
+        verbose='INFO',#'DEBUG',
+        skip=['Visualize'], # skipped because interactive
+        force=True,
+    )