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new stable release (v1.0.20241208)#896

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neurolabusc merged 105 commits intomasterrordenlab/dcm2niix:masterfrom developmentrordenlab/dcm2niix:developmentCopy head branch name to clipboardDec 8, 2024

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Commits on Dec 22, 2023

• issue 769: relax the check for bvec components > 1 a bit.

  

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Commits on Feb 17, 2024

• Merge branch 'development' of https://github.com/rordenlab/dcm2niix into development

  

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Commits on Feb 22, 2024

• GE UHP/7T Diffusion SliceTiming (#796)

  

  Jaemin Shin

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• Merge pull request #798 from mr-jaemin/development

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Commits on Feb 28, 2024

• DCM2NIIXFSLIB changes

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• Merge pull request #800 from yhuang43/development

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Commits on Mar 1, 2024

• Philips renaming (#795)

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Commits on Mar 2, 2024

• Merge branch 'development' of https://github.com/rordenlab/dcm2niix into development

  

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Commits on Mar 11, 2024

• PET BIDS (#802)

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• codespell

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• more PET support (#802)

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Commits on Mar 13, 2024

• GE UHP/7T Diffusion SliceTiming Update (#796)

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Commits on Mar 14, 2024

• GE UHP/7T Diffusion SliceTiming Update2

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• Renambed ASL fields to match new BIDS specification (https://bids-specification.readthedocs.io/en/stable/glossary.html#labelingpulseflipangle-metadata)

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• Merge branch 'rordenlab:development' into development

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• Merge pull request #805 from mr-jaemin/development

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Commits on Mar 15, 2024

• Restore PR modifications (484de5b)

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• ASL BIDS suggestions from @jan-petr

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• Another suggestion from @jan-petr

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Commits on Mar 21, 2024

• Experimental start for reproin support

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Commits on Mar 25, 2024

• Unlatch 0400,0561 based on nesting depth (#807)

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Commits on Mar 28, 2024

• GE AcquisitionDuration (#808)

  

  Jaemin Shin

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Commits on Mar 29, 2024

• GE AcquisitionDuration minor (#808)

  

  Jaemin Shin

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• Merge pull request #810 from mr-jaemin/development

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Commits on Apr 17, 2024

• Add DeidentificationMethod and DeidentificationMethodCodeSequence to json

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Commits on Apr 18, 2024

• Merge branch 'development' of https://github.com/rordenlab/dcm2niix into development

  

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• Disable XA partial vol detection for single slice files (#742)

  

  Robert Reid

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Commits on Apr 20, 2024

• Fix CSA n_tags check (#633)

  

  Robert Reid

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Commits on Apr 25, 2024

• Merge branch 'rordenlab:master' into DeIdentificationMethod_json

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• More robust detection of whether tags are inside DeidentificationMethodCodeSequence

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Commits on May 23, 2024

• Merge pull request #814 from captainnova/development

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• Update issue templates

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• Console script return status code (#811)

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Commits on May 31, 2024

• add MAGNITUDE to ImageType for GE data, necessary for heudiconv logic

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Commits on Jul 3, 2024

• CI: PyPI release

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Commits on Jul 24, 2024

• Merge pull request #824 from tomhampshire/main-exit-code

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• Merge pull request #826 from UNFmontreal/fix/ge_magnitude

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• Merge pull request #833 from casperdcl/pypi-release

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• GE slice timing (#838)

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• UIH DWI (#836)

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Commits on Jul 25, 2024

• myNoRois option to ignore ROIs (#832)

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• minBvalThreshold (#827)

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• Siemens instance number re-use (#837)

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• Specific for Siemens

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• TablePosition (#726)

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Commits on Jul 26, 2024

• GE TablePosition (#726)

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• codespell:disable does not seem to work

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Commits on Jul 30, 2024

• Bruker kludge (#839)

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Commits on Jul 31, 2024

• Fix corrupted raw nrrd file output on Windows

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Commits on Aug 4, 2024

• Merge pull request #843 from lassoan/patch-2

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Commits on Aug 11, 2024

• TablePosition (#726)

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• Siemens version details (#848)

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Commits on Aug 12, 2024

• GE TablePosition tableDelta

  

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Commits on Aug 13, 2024

• Do not report PhaseEncodingDirection for 3D sequences (#849)

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• Merge pull request #850 from mr-jaemin/development

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• Revese polarity of Philips/Siemens TablePos Z (#726)

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Commits on Aug 14, 2024

• Only add "MAGNITUDE" if neither ?MAGNITUDE" or "M" is listed as ImageType (#851)

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• Only append PHASE, REAL, etc to ImageType if term or alias not already present (#851)

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Commits on Aug 16, 2024

• Total Read-Out Time Documentation update for GEHC

  

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• Merge pull request #852 from mr-jaemin/development

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Commits on Aug 20, 2024

• WASM build

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Commits on Aug 26, 2024

• add wasm build for npm package

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• Merge pull request #856 from rordenlab/feature/add-wasm-npm-module

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Commits on Aug 27, 2024

• Merge pull request #813 from CGSchwarzMayo/DeIdentificationMethod_json

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Commits on Sep 11, 2024

• workaround for safari and allow nested directories

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• bump version for npm release

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• Merge pull request #858 from rordenlab/bug/fix-safari-wasm-issues

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Commits on Sep 14, 2024

• Make PR813 compilation conditional (#861)

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• clang-format

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• AppVeyor Linux compile error

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• Another attempt for DT_UNKNOWN being defined in dirent.h

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Commits on Sep 23, 2024

• Fix typo found by codespell

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Commits on Sep 26, 2024

• Merge pull request #866 from DimitriPapadopoulos/codespell

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Commits on Sep 28, 2024

• Enhanced Mediso (#853)

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Commits on Sep 29, 2024

• Deidentification (#861)

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Commits on Sep 30, 2024

• Reduce stack pressure (#867)

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• Reduce stack pressure (#867)

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• Reduce stack pressure (#867)

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• Close quote (#869)

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Commits on Oct 2, 2024

• Reformat json DeidentificationMethod

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• refactor file handling

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Commits on Oct 3, 2024

• Merge pull request #872 from rordenlab/wasm/refactor-for-drop

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• Merge pull request #871 from CGSchwarzMayo/DeIdentificationMethod_json_list2

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Commits on Oct 4, 2024

• XA60/61 invalid slice times and 0018,9155 for SMS (#870)

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Commits on Oct 12, 2024

• Experimental fix for issue 797 (#797)

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• Adjust for ms

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• Revert (#797)

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Commits on Oct 15, 2024

• kludge for inaccurate start time (0021,1104) in first volume (#875)

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Commits on Oct 21, 2024

• Update CMake min version.

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• Include tinydir.h earlier; avoid R-unfriendly calls

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• Remove R special case now that stack usage is less

  jonclayden

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• Small fixes: out-of-bounds or NULL accesses, memory leaks, uninitialised decision variables

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• Merge pull request #876 from jonclayden/divest-1.1

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Commits on Oct 22, 2024

• Deidentification refactor (#877)

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Commits on Oct 23, 2024

• ISO_IR 100 -> UTF8 for DeidentificationMethod (#878)

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Commits on Oct 24, 2024

• ImageType reporting (#881)

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Commits on Oct 25, 2024

• strncat not strcat (#883)

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Commits on Oct 31, 2024

• Improve PET and PET BIDS (#886)

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Commits on Nov 6, 2024

• Siemens series instance UID issues (#394)

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• Detect variability in first frame's image position patient (#888)

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Commits on Nov 13, 2024

• Table position from CSA (#890)

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• Update qForm with crop (#889)

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Commits on Nov 27, 2024

• Removing slice timing data for derived and localizer data (e.g. Siemens derived FA maps).

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Commits on Dec 8, 2024

• Do not convert enhanced DICOMs where slice orientation varies within a series (#894)

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• Update dcm_qa submodules.

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