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@rnajena

RNA Bioinformatics and High-Throughput Analysis Jena

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  1. bertax bertax Public

    Taxonomic classification of DNA sequences

    Python 52 9

  2. poseidon poseidon Public

    PoSeiDon: positive selection detection and recombination analysis pipeline

    C 37 9

  3. vidhop vidhop Public

    VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.

    Python 20 9

  4. EpiDope EpiDope Public

    Prediction of B-cell epitopes from amino acid sequences using deep neural networks.

    Python 16 6

  5. viralclust viralclust Public

    Small pipeline to cluster viral genomes based on their k-mer content. WiP

    Nextflow 16 5

  6. read5 read5 Public

    Wrapper to read fast5, slow5, blow5 and pod5 files.

    Python 10 1

Repositories

Showing 10 of 24 repositories
  • anchorna Public

    Find anchors in RNA/DNA sequences

    rnajena/anchorna’s past year of commit activity
    Python 5 MIT 0 0 0 Updated Apr 4, 2025
  • dynamont Public
    rnajena/dynamont’s past year of commit activity
    C++ 3 GPL-3.0 1 0 0 Updated Apr 4, 2025
  • magnipore Public

    Magnipore: Differential single nucleotide changes of ONT signals

    rnajena/magnipore’s past year of commit activity
    Red 5 GPL-3.0 0 0 0 Updated Apr 4, 2025
  • sugar Public

    S*R -- A Python framework for bioinformatics

    rnajena/sugar’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Apr 4, 2025
  • SweetSynteny Public
    rnajena/SweetSynteny’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 31, 2025
  • read5_ont Public

    Wrapper to read fast5 and pod5 files.

    rnajena/read5_ont’s past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Mar 26, 2025
  • read5 Public

    Wrapper to read fast5, slow5, blow5 and pod5 files.

    rnajena/read5’s past year of commit activity
    Python 10 GPL-3.0 1 1 0 Updated Mar 26, 2025
  • diffMONT Public

    diffONT is a python-based tool for predicting methylation-specific PCR (MSP) primers, based on Nanopore sequencing data. Given mutliple bedmethyl files, diffONT detects methylation specific PCR primer regions, which can distinguish between two groups of samples (originally cancer patients vs. healthy controls).

    rnajena/diffMONT’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 20, 2025
  • poseidon Public

    PoSeiDon: positive selection detection and recombination analysis pipeline

    rnajena/poseidon’s past year of commit activity
    C 37 MIT 9 8 (1 issue needs help) 0 Updated Feb 21, 2025
  • viralclust Public

    Small pipeline to cluster viral genomes based on their k-mer content. WiP

    rnajena/viralclust’s past year of commit activity
    Nextflow 16 GPL-3.0 5 7 0 Updated Feb 6, 2025
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