Semi-Automated Footprinting Analysis
Alain Laederach, Rhiju Das, Sam Pearlman, Dan Herschlag, Russ Altman
(C) Stanford University, 2004
Ported to a new GitHub repository for modernization by R. Das, Stanford University.
- Install MATLAB 2014 or later.
- In MATLAB, find the menu item "Environment/ Set Path..." and add the the directory
SAFA/src. - Check out the example files in
SAFA/example - Better docs are needed -- for now, check out User Guide at SAFAUserGuide_v1_1s.pdf, which will be updated pretty soon.
- In the meanwhile, if you have advice for other SAFA users or questions, contact us at [email protected].
Das, R., Laederach, A., Pearlman, S.M., Herschlag, D., Altman, R.B. (2005) "SAFA: Semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments", RNA 11:344-354 Link