refine logic for identifying ctgov version and make it more robust #423
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| # https://github.com/r-lib/actions/tree/master/examples#standard-ci-workflow | |
| # | |
| # note: update | |
| # https://github.com/rfhb/ctrdata/settings/secrets/actions/CACHE_VERSION | |
| on: [push, pull_request] | |
| name: R-CMD-CHECK-win-macos-duckdb-mongodb-sqlite | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'oldrel'} | |
| # error installing dependencies under devel | |
| #- {os: macOS-latest, r: 'devel'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| AT_HOME: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GHPAT }} | |
| # https://docs.github.com/en/actions/reference/software-installed-on-github-hosted-runners | |
| # includes on macOS 10.15 mongod 4.2.8 and Windows Server 201{6,9}: | |
| # Version ServiceName ServiceStatus ServiceStartType | |
| # 4.2.8.0 MongoDB Running Automatic | |
| # disabled on Windows from August 2022 | |
| # https://github.com/actions/runner-images/issues/5949 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages("remotes") | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'windows-latest' | |
| uses: actions/cache@v1 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ secrets.CACHE_VERSION }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ secrets.CACHE_VERSION }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install dependencies | |
| run: | | |
| utils::install.packages("DBI") | |
| utils::install.packages("duckdb", repos = "https://duckdb.r-universe.dev") | |
| remotes::install_github("rfhb/ctrdata") | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran(c("rcmdcheck", "covr")) | |
| remotes::install_github("ropensci/nodbi") | |
| shell: Rscript {0} | |
| - name: Windows install additional dependencies | |
| if: runner.os == 'windows-latest' | |
| # to install cygwin to provide php, sed, cat etc. | |
| run: | | |
| ctrdata::installCygwinWindowsDoInstall() | |
| shell: Rscript {0} | |
| - name: Windows cache additional dependencies | |
| if: runner.os == 'windows-latest' | |
| uses: actions/cache@v2 | |
| with: | |
| path: c:\cygwin | |
| key: ${{ runner.os }}-${{ hashFiles('**/lockfiles') }} | |
| - uses: r-lib/actions/setup-pandoc@v1 | |
| # - uses: ankane/setup-postgres@v1 | |
| # with: | |
| # postgres-version: 14 | |
| # database: test | |
| - name: Test coverage | |
| if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release' | |
| # covr::codecov() never ends under Windows | |
| # covr::codecov() uses environment variable CODECOV_TOKEN | |
| run: covr::codecov(quiet = FALSE) | |
| shell: Rscript {0} | |
| - name: Upload failed check results | |
| if: failure() | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |