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Initial commit

Initial commit #1

Workflow file for this run

name: GitHub Actions CI
on:
push:
branches: [ main, master, develop ]
paths-ignore:
- '**.md'
workflow_dispatch:
jobs:
########################################################################################
make:
name: Make
strategy:
fail-fast: false
matrix:
machine: [ubuntu-latest, macOS-12]
compiler: [g++-11]
runs-on: ['${{ matrix.machine }}']
steps:
- uses: actions/checkout@v2
with:
submodules: recursive
- name: get tags
run: |
cd ./libs/igraph
git fetch --tags origin
- name: make
run: |
make -j32 CXX=${{matrix.compiler}}
cp ./clusty ./clusty-${{matrix.compiler}}
make clean
- name: tar artifacts
run: tar -cvf clusty.tar ./clusty-${{matrix.compiler}} ./test/cmp.py ./test/vir61.*
- uses: actions/upload-artifact@v2
with:
name: executable-artifact-${{ matrix.machine }}
path: ./clusty.tar
########################################################################################
vir61-linkage:
name: Vir61
needs: make
strategy:
fail-fast: false
matrix:
machine: [ubuntu-latest, macOS-12]
compiler: [g++-11]
algo: [single, complete]
threshold: [95, 70]
runs-on: ['${{ matrix.machine }}']
steps:
- uses: actions/download-artifact@v2
with:
name: executable-artifact-${{ matrix.machine }}
path: ./
- name: untar artifacts
run: |
tar -xf clusty.tar
- name: ${{matrix.algo}}, ${{matrix.threshold}} (with representatives, reordered columns)
run: |
./clusty-${{matrix.compiler}} --algo ${{matrix.algo}} --objects-file ./test/vir61.list --similarity --min ani 0.${{matrix.threshold}} --id-cols id2 id1 --distance-col ani ./test/vir61.ani vir61.${{matrix.algo}}.${{matrix.threshold}} --out-representatives
python ./test/cmp.py vir61.${{matrix.algo}}.${{matrix.threshold}} ./test/vir61.${{matrix.algo}}.${{matrix.threshold}}.python.csv